General information for g15764.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-1,6-fucosyltransferase.
Parent gene
- The parent gene g15764 is located on chr_4: 6701526..6702940 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15764 | g15764.t3 | TTS | g15764.t3 | 6701161 | 6701161 |
| chr_4 | g15764 | g15764.t3 | isoform | g15764.t3 | 6701218 | 6702259 |
| chr_4 | g15764 | g15764.t3 | exon | g15764.t3.exon1 | 6701218 | 6701612 |
| chr_4 | g15764 | g15764.t3 | cds | g15764.t3.CDS1 | 6701526 | 6701612 |
| chr_4 | g15764 | g15764.t3 | exon | g15764.t3.exon2 | 6701676 | 6701888 |
| chr_4 | g15764 | g15764.t3 | cds | g15764.t3.CDS2 | 6701676 | 6701888 |
| chr_4 | g15764 | g15764.t3 | exon | g15764.t3.exon3 | 6701981 | 6702259 |
| chr_4 | g15764 | g15764.t3 | cds | g15764.t3.CDS3 | 6701981 | 6702229 |
| chr_4 | g15764 | g15764.t3 | TSS | g15764.t3 | NA | NA |
Sequences
>g15764.t3 Gene=g15764 Length=887
GCAGTTGATGATTATTATGATCAACGAGAAATGGTCGAAAGAATCGACAAACGAAGAGTT
TATATAGCAAGTGATGATCCAAAAGTCATTGATGAAGCTAGAAGAAATTATCCACAATAT
GAAGTGATAGGAGATCCAGAAATTGCAAAACATGCAGCTGTATCAACAAGATACACAGAC
ACATCACTAAATGGCATCATGTTAGACATTGATTTACTCTCAAAGAGTGATTTTCTCGTT
TGTACTTTTAGTAGTCAAGTTTGTAGGGTTGCTTATGAGATAATGCAATCAATGTATCCT
GATGCCAGTAGTAGATTTAAGTCACTAGATGACATTTATTATTATGGAGGTCAAAATGCA
CATAATGTGATAAGTGTCATGGACCATCAACCAAAGAGTACTGATCAAATTTCAATGAAA
ACTGGTGATTTAATTGGAATTGCCGGCAATCATTGGAATGGTTTTTCAAAAGGCAAAAAT
ATTAGAAATAATCAAAATGGACTATTTCCATCATTTAAAGTAAATAATAAAGTTGAAGTT
GCAGATTTTCCAACATACAGTCACATCGATGAGAATTAAATGATCACCAATCTCATAATA
AAAAATATGAAAAAATTCATTCCTTTGAACTTCTTCGACTTTCAAACAACTGTGAACAAA
AATTTTTTATAATCAAATCTTATGAACAGAAAAAAAGTCCAAGATGTCAAAAATAAATCG
ATCAAAGTATGAAAATTGCTGAAAAGTTTTATATATTAATTTAAAATCGATCAAATATGT
AACAAATATATTTTTCTTGTTATTTTTTACGTTCTATTTTTCTGTGTTCTTAGTAATTTA
ACATAGTGAGTTTTTATTTTTTTAGATACACACAAAAATATGAAAAA
>g15764.t3 Gene=g15764 Length=182
MVERIDKRRVYIASDDPKVIDEARRNYPQYEVIGDPEIAKHAAVSTRYTDTSLNGIMLDI
DLLSKSDFLVCTFSSQVCRVAYEIMQSMYPDASSRFKSLDDIYYYGGQNAHNVISVMDHQ
PKSTDQISMKTGDLIGIAGNHWNGFSKGKNIRNNQNGLFPSFKVNNKVEVADFPTYSHID
EN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15764.t3 | CDD | cd11792 | SH3_Fut8 | 112 | 166 | 0.0000000 |
| 4 | g15764.t3 | Gene3D | G3DSA:3.40.50.11350 | - | 1 | 112 | 0.0000000 |
| 5 | g15764.t3 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 113 | 167 | 0.0000000 |
| 2 | g15764.t3 | PANTHER | PTHR13132 | ALPHA- 1,6 -FUCOSYLTRANSFERASE | 7 | 177 | 0.0000000 |
| 1 | g15764.t3 | Pfam | PF14604 | Variant SH3 domain | 117 | 164 | 0.0000001 |
| 6 | g15764.t3 | ProSiteProfiles | PS51659 | Glycosyltransferase family 23 (GT23) domain profile. | 1 | 99 | 46.8140000 |
| 7 | g15764.t3 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 108 | 169 | 13.5390000 |
| 3 | g15764.t3 | SUPERFAMILY | SSF50044 | SH3-domain | 105 | 164 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
