General information for g15769.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g15769 is located on chr_4: 6711628..6712790 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15769 | g15769.t9 | TTS | g15769.t9 | 6711620 | 6711620 |
| chr_4 | g15769 | g15769.t9 | isoform | g15769.t9 | 6711628 | 6712790 |
| chr_4 | g15769 | g15769.t9 | exon | g15769.t9.exon1 | 6711628 | 6711788 |
| chr_4 | g15769 | g15769.t9 | cds | g15769.t9.CDS1 | 6711762 | 6711788 |
| chr_4 | g15769 | g15769.t9 | exon | g15769.t9.exon2 | 6711874 | 6711947 |
| chr_4 | g15769 | g15769.t9 | cds | g15769.t9.CDS2 | 6711874 | 6711947 |
| chr_4 | g15769 | g15769.t9 | exon | g15769.t9.exon3 | 6712210 | 6712377 |
| chr_4 | g15769 | g15769.t9 | cds | g15769.t9.CDS3 | 6712210 | 6712377 |
| chr_4 | g15769 | g15769.t9 | exon | g15769.t9.exon4 | 6712658 | 6712790 |
| chr_4 | g15769 | g15769.t9 | cds | g15769.t9.CDS4 | 6712658 | 6712790 |
| chr_4 | g15769 | g15769.t9 | TSS | g15769.t9 | 6712853 | 6712853 |
Sequences
>g15769.t9 Gene=g15769 Length=536
ATGACAAAATATAAGCTGACTTATTTTAATTTTGTTGCTCTTGGTGAGCCTATAAGATTT
TTATTATCTTATGGCGGTGTTGACTTTGAAGATAATCGAATTGAATGGAAAGATTGGCCT
GAAATTAAACCAACAACACCACTTCATCAAGTTCCAATTCTACAAATAGACAATGAAGTT
CTTTACCAAACAATTCCAATTTGTCGTTATTTGGGTGCAAAGTTTAACCTAACAGGCGCC
GATGATTTTGAGAATTATAAACTCGACAATTGCGTGCAAACAATAACAGACCTACGAATG
AAAATCGAAATGGTAGCATGGGATAAATCCTCACCACAAAATTTTATTGATGAGAAACGA
GCTGAACTTTTAAATGGGCTGATCTTTATTTTGTGCCAATGATTGAATACATGAATTTTA
TGATGAAAACAAATTTACTGGAAGAATATGAAAATTTAAAGAAAGTTTATGAAAATGTCA
TGAAAATTGAAAGTATTAAAAATTATGTTGCTAAAAGACCAACACAGGGAAATTGA
>g15769.t9 Gene=g15769 Length=133
MTKYKLTYFNFVALGEPIRFLLSYGGVDFEDNRIEWKDWPEIKPTTPLHQVPILQIDNEV
LYQTIPICRYLGAKFNLTGADDFENYKLDNCVQTITDLRMKIEMVAWDKSSPQNFIDEKR
AELLNGLIFILCQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15769.t9 | CDD | cd03039 | GST_N_Sigma_like | 4 | 72 | 0.000 |
| 6 | g15769.t9 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 4 | 75 | 0.000 |
| 5 | g15769.t9 | Gene3D | G3DSA:1.20.1050.10 | - | 76 | 113 | 0.000 |
| 2 | g15769.t9 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 3 | 110 | 0.000 |
| 3 | g15769.t9 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 3 | 110 | 0.000 |
| 1 | g15769.t9 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 5 | 72 | 0.000 |
| 7 | g15769.t9 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 2 | 79 | 25.352 |
| 9 | g15769.t9 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 3 | 115 | 0.000 |
| 4 | g15769.t9 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 3 | 76 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
