General information for g15774.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 1-10.
Parent gene
- The parent gene g15774 is located on chr_4: 6750862..6752509 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15774 | g15774.t1 | TSS | g15774.t1 | 6749688 | 6749688 |
| chr_4 | g15774 | g15774.t1 | isoform | g15774.t1 | 6749705 | 6752509 |
| chr_4 | g15774 | g15774.t1 | exon | g15774.t1.exon1 | 6749705 | 6749962 |
| chr_4 | g15774 | g15774.t1 | cds | g15774.t1.CDS1 | 6749705 | 6749962 |
| chr_4 | g15774 | g15774.t1 | exon | g15774.t1.exon2 | 6750856 | 6751874 |
| chr_4 | g15774 | g15774.t1 | cds | g15774.t1.CDS2 | 6750856 | 6751874 |
| chr_4 | g15774 | g15774.t1 | exon | g15774.t1.exon3 | 6752230 | 6752509 |
| chr_4 | g15774 | g15774.t1 | cds | g15774.t1.CDS3 | 6752230 | 6752509 |
| chr_4 | g15774 | g15774.t1 | TTS | g15774.t1 | 6752509 | 6752509 |
Sequences
>g15774.t1 Gene=g15774 Length=1557
ATGAACTTCTACGCGATTTGTGTAATATTTTTGTTGCTGAGAAGTCATACAAGTGATGCA
ACTCGAATACTTGGACTTTTTATTCATCCAGCAATTTCACATTTTCGTGCATTTCAATCA
GTGTTAAGAGAACTAGCTGTGAGAGGTCATGAAGTGATCGTTGTTAGTCATTTTAGTGAA
AAAAATAAGCCAGAAAACTACAAAGAATTGTTGCTTGATCAAGAAGTTGTGCTTACAGGA
ACAGCACCGGTTGATGAGGTTTACGCACCACGCAATTTTTACATTTATTACAAAGAATTT
TACGCATTAATGAATGAAGGAACAGAAGCATGTGAAGCGTTTTTCAATTCTGATCATATT
TCAACACTTTTTGATCTCAACAAAGAAAAGAAATTTGAAATTTTAATAACAGAATATTTC
AATACTGATTGTGTTCTTGGTTTAGCTTATAAATTGAATATAACAAAATTTATAGGCATG
AGTTCATGTGCATTAATGCCATGGCATTACGAAAGAATTGGTTTACCTCAAACTCCATCT
TATATTCCCAATGAATTTGTTGGATTTTCATCAAAAATGAATTTTCATGAAAGACTTGTC
AATTGGCTTGTTGTGACATTAACAAAAATTGGCTATAGATATCAACAAATAATTGATAAT
GCTCGAGTTAAGAAATATCTTGGTGATGAAATTCCTGACTTAAATGATCTTGCAAAGACC
ACAAATTTGCTTTTTGTTAATCAACATTTTTCAATTTCTGGTGTTAAACCATTCCCAGCT
TCAGTAATTGAAATTGGTGGAGTTCATATAAAAGAAAGCAAAAATACACTTCCAAATGAT
ATTCAAAAAATTCTCAATAATGCAAAACATGGTGTGCTTTATGTTTCATGGGGATCAATA
ATAAGTCCAACTGGAATGCCTGAAGATAAAAAGCAAAACATCGTCAATGCTTTCAAAAAG
TTGCCACAAACAATTCTTTGGAAATGGGAAAATGATTCAGTCACGGCAACTGCTAAAAAT
ATTCACATTCGCAATTGGTTTCCGCAAACTGACATTTTATGTCATGAAAAAGTTGTTGCT
TTTTTGTCTCATGGTGGAATGATGGGTGTATCTGAAGCTGTACATTGTAAAAAACCAACA
ATTGTGACACCAATTTATGGTGATCAATATTTAAATGCAGCTGCATTAAAAGAACGTGGA
ATGGGTGTGATTTTGAATTATGATGAGCTTAGTGAAGAAAAAATTTATGAAAGTATTGTT
GAAATTTTAAAACCGAGCTACAAAGAAGCAGCAGAAAAAGTGTCAAATTCCTTCAAAAAT
CGTCTAACAAGTCCATTAGAAACCGCAATCTATTGGATCGAATATTTAGCAAATACTGAT
GGAAATTTAATAAAATCACATGCAGTAGAATTAAATTATTTCACTTATCACTCATTTGAT
GTTCTTTTATTTATTTTCATTTTAATTTTCTTACCAATTTTTCTCATTTTTAAATTTTTT
AAATCAAAAAAATCACCAGAAAATGAAAGAAAGTTGAAAATAAAAAAAACTAAATAA
>g15774.t1 Gene=g15774 Length=518
MNFYAICVIFLLLRSHTSDATRILGLFIHPAISHFRAFQSVLRELAVRGHEVIVVSHFSE
KNKPENYKELLLDQEVVLTGTAPVDEVYAPRNFYIYYKEFYALMNEGTEACEAFFNSDHI
STLFDLNKEKKFEILITEYFNTDCVLGLAYKLNITKFIGMSSCALMPWHYERIGLPQTPS
YIPNEFVGFSSKMNFHERLVNWLVVTLTKIGYRYQQIIDNARVKKYLGDEIPDLNDLAKT
TNLLFVNQHFSISGVKPFPASVIEIGGVHIKESKNTLPNDIQKILNNAKHGVLYVSWGSI
ISPTGMPEDKKQNIVNAFKKLPQTILWKWENDSVTATAKNIHIRNWFPQTDILCHEKVVA
FLSHGGMMGVSEAVHCKKPTIVTPIYGDQYLNAAALKERGMGVILNYDELSEEKIYESIV
EILKPSYKEAAEKVSNSFKNRLTSPLETAIYWIEYLANTDGNLIKSHAVELNYFTYHSFD
VLLFIFILIFLPIFLIFKFFKSKKSPENERKLKIKKTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g15774.t1 | CDD | cd03784 | GT1_Gtf-like | 22 | 435 | 5.65242E-61 |
| 6 | g15774.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 272 | 440 | 1.6E-44 |
| 2 | g15774.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 12 | 491 | 4.0E-178 |
| 3 | g15774.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 12 | 491 | 4.0E-178 |
| 1 | g15774.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 28 | 501 | 3.9E-67 |
| 9 | g15774.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 10 | g15774.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 11 | g15774.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 13 | g15774.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 20 | - |
| 8 | g15774.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 480 | - |
| 12 | g15774.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 481 | 500 | - |
| 7 | g15774.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 501 | 518 | - |
| 16 | g15774.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 346 | 389 | - |
| 4 | g15774.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 22 | 460 | 6.63E-95 |
| 5 | g15774.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 15 | g15774.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 481 | 500 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
