Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ecdysteroid UDP-glucosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15774 g15774.t2 TSS g15774.t2 6749688 6749688
chr_4 g15774 g15774.t2 isoform g15774.t2 6749705 6751569
chr_4 g15774 g15774.t2 exon g15774.t2.exon1 6749705 6749962
chr_4 g15774 g15774.t2 cds g15774.t2.CDS1 6749705 6749962
chr_4 g15774 g15774.t2 exon g15774.t2.exon2 6750856 6751569
chr_4 g15774 g15774.t2 cds g15774.t2.CDS2 6750856 6751569
chr_4 g15774 g15774.t2 TTS g15774.t2 6752509 6752509

Sequences

>g15774.t2 Gene=g15774 Length=972
ATGAACTTCTACGCGATTTGTGTAATATTTTTGTTGCTGAGAAGTCATACAAGTGATGCA
ACTCGAATACTTGGACTTTTTATTCATCCAGCAATTTCACATTTTCGTGCATTTCAATCA
GTGTTAAGAGAACTAGCTGTGAGAGGTCATGAAGTGATCGTTGTTAGTCATTTTAGTGAA
AAAAATAAGCCAGAAAACTACAAAGAATTGTTGCTTGATCAAGAAGTTGTGCTTACAGGA
ACAGCACCGGTTGATGAGGTTTACGCACCACGCAATTTTTACATTTATTACAAAGAATTT
TACGCATTAATGAATGAAGGAACAGAAGCATGTGAAGCGTTTTTCAATTCTGATCATATT
TCAACACTTTTTGATCTCAACAAAGAAAAGAAATTTGAAATTTTAATAACAGAATATTTC
AATACTGATTGTGTTCTTGGTTTAGCTTATAAATTGAATATAACAAAATTTATAGGCATG
AGTTCATGTGCATTAATGCCATGGCATTACGAAAGAATTGGTTTACCTCAAACTCCATCT
TATATTCCCAATGAATTTGTTGGATTTTCATCAAAAATGAATTTTCATGAAAGACTTGTC
AATTGGCTTGTTGTGACATTAACAAAAATTGGCTATAGATATCAACAAATAATTGATAAT
GCTCGAGTTAAGAAATATCTTGGTGATGAAATTCCTGACTTAAATGATCTTGCAAAGACC
ACAAATTTGCTTTTTGTTAATCAACATTTTTCAATTTCTGGTGTTAAACCATTCCCAGCT
TCAGTAATTGAAATTGGTGGAGTTCATATAAAAGAAAGCAAAAATACACTTCCAAATGAT
ATTCAAAAAATTCTCAATAATGCAAAACATGGTGTGCTTTATGTTTCATGGGGATCAATA
ATAAGTCCAACTGGAATGCCTGAAGATAAAAAGCAAAACATCGTCAATGCTTTCAAAAAG
TTGCCACAAACA

>g15774.t2 Gene=g15774 Length=324
MNFYAICVIFLLLRSHTSDATRILGLFIHPAISHFRAFQSVLRELAVRGHEVIVVSHFSE
KNKPENYKELLLDQEVVLTGTAPVDEVYAPRNFYIYYKEFYALMNEGTEACEAFFNSDHI
STLFDLNKEKKFEILITEYFNTDCVLGLAYKLNITKFIGMSSCALMPWHYERIGLPQTPS
YIPNEFVGFSSKMNFHERLVNWLVVTLTKIGYRYQQIIDNARVKKYLGDEIPDLNDLAKT
TNLLFVNQHFSISGVKPFPASVIEIGGVHIKESKNTLPNDIQKILNNAKHGVLYVSWGSI
ISPTGMPEDKKQNIVNAFKKLPQT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15774.t2 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 12 323 2.9E-99
3 g15774.t2 PANTHER PTHR48043:SF114 DOROTHY, ISOFORM A-RELATED 12 323 2.9E-99
1 g15774.t2 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 28 324 1.9E-20
7 g15774.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
8 g15774.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
9 g15774.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
10 g15774.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 20 -
6 g15774.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 324 -
4 g15774.t2 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 22 324 2.15E-46
5 g15774.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed