Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15774 g15774.t3 isoform g15774.t3 6750862 6751569
chr_4 g15774 g15774.t3 exon g15774.t3.exon1 6750862 6751569
chr_4 g15774 g15774.t3 cds g15774.t3.CDS1 6750907 6751569
chr_4 g15774 g15774.t3 TTS g15774.t3 6752509 6752509
chr_4 g15774 g15774.t3 TSS g15774.t3 NA NA

Sequences

>g15774.t3 Gene=g15774 Length=708
GCACCACGCAATTTTTACATTTATTACAAAGAATTTTACGCATTAATGAATGAAGGAACA
GAAGCATGTGAAGCGTTTTTCAATTCTGATCATATTTCAACACTTTTTGATCTCAACAAA
GAAAAGAAATTTGAAATTTTAATAACAGAATATTTCAATACTGATTGTGTTCTTGGTTTA
GCTTATAAATTGAATATAACAAAATTTATAGGCATGAGTTCATGTGCATTAATGCCATGG
CATTACGAAAGAATTGGTTTACCTCAAACTCCATCTTATATTCCCAATGAATTTGTTGGA
TTTTCATCAAAAATGAATTTTCATGAAAGACTTGTCAATTGGCTTGTTGTGACATTAACA
AAAATTGGCTATAGATATCAACAAATAATTGATAATGCTCGAGTTAAGAAATATCTTGGT
GATGAAATTCCTGACTTAAATGATCTTGCAAAGACCACAAATTTGCTTTTTGTTAATCAA
CATTTTTCAATTTCTGGTGTTAAACCATTCCCAGCTTCAGTAATTGAAATTGGTGGAGTT
CATATAAAAGAAAGCAAAAATACACTTCCAAATGATATTCAAAAAATTCTCAATAATGCA
AAACATGGTGTGCTTTATGTTTCATGGGGATCAATAATAAGTCCAACTGGAATGCCTGAA
GATAAAAAGCAAAACATCGTCAATGCTTTCAAAAAGTTGCCACAAACA

>g15774.t3 Gene=g15774 Length=221
MNEGTEACEAFFNSDHISTLFDLNKEKKFEILITEYFNTDCVLGLAYKLNITKFIGMSSC
ALMPWHYERIGLPQTPSYIPNEFVGFSSKMNFHERLVNWLVVTLTKIGYRYQQIIDNARV
KKYLGDEIPDLNDLAKTTNLLFVNQHFSISGVKPFPASVIEIGGVHIKESKNTLPNDIQK
ILNNAKHGVLYVSWGSIISPTGMPEDKKQNIVNAFKKLPQT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15774.t3 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; 169 221 2.6e-05
2 g15774.t3 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 3 220 0.0e+00
3 g15774.t3 PANTHER PTHR48043:SF114 DOROTHY, ISOFORM A-RELATED 3 220 0.0e+00
1 g15774.t3 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 19 221 0.0e+00
4 g15774.t3 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 5 221 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed