General information for g15774.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 1-10.
Parent gene
- The parent gene g15774 is located on chr_4: 6750862..6752509 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15774 | g15774.t4 | isoform | g15774.t4 | 6750862 | 6752509 |
| chr_4 | g15774 | g15774.t4 | exon | g15774.t4.exon1 | 6750862 | 6751874 |
| chr_4 | g15774 | g15774.t4 | cds | g15774.t4.CDS1 | 6750907 | 6751874 |
| chr_4 | g15774 | g15774.t4 | exon | g15774.t4.exon2 | 6752230 | 6752509 |
| chr_4 | g15774 | g15774.t4 | cds | g15774.t4.CDS2 | 6752230 | 6752509 |
| chr_4 | g15774 | g15774.t4 | TTS | g15774.t4 | 6752509 | 6752509 |
| chr_4 | g15774 | g15774.t4 | TSS | g15774.t4 | NA | NA |
Sequences
>g15774.t4 Gene=g15774 Length=1293
GCACCACGCAATTTTTACATTTATTACAAAGAATTTTACGCATTAATGAATGAAGGAACA
GAAGCATGTGAAGCGTTTTTCAATTCTGATCATATTTCAACACTTTTTGATCTCAACAAA
GAAAAGAAATTTGAAATTTTAATAACAGAATATTTCAATACTGATTGTGTTCTTGGTTTA
GCTTATAAATTGAATATAACAAAATTTATAGGCATGAGTTCATGTGCATTAATGCCATGG
CATTACGAAAGAATTGGTTTACCTCAAACTCCATCTTATATTCCCAATGAATTTGTTGGA
TTTTCATCAAAAATGAATTTTCATGAAAGACTTGTCAATTGGCTTGTTGTGACATTAACA
AAAATTGGCTATAGATATCAACAAATAATTGATAATGCTCGAGTTAAGAAATATCTTGGT
GATGAAATTCCTGACTTAAATGATCTTGCAAAGACCACAAATTTGCTTTTTGTTAATCAA
CATTTTTCAATTTCTGGTGTTAAACCATTCCCAGCTTCAGTAATTGAAATTGGTGGAGTT
CATATAAAAGAAAGCAAAAATACACTTCCAAATGATATTCAAAAAATTCTCAATAATGCA
AAACATGGTGTGCTTTATGTTTCATGGGGATCAATAATAAGTCCAACTGGAATGCCTGAA
GATAAAAAGCAAAACATCGTCAATGCTTTCAAAAAGTTGCCACAAACAATTCTTTGGAAA
TGGGAAAATGATTCAGTCACGGCAACTGCTAAAAATATTCACATTCGCAATTGGTTTCCG
CAAACTGACATTTTATGTCATGAAAAAGTTGTTGCTTTTTTGTCTCATGGTGGAATGATG
GGTGTATCTGAAGCTGTACATTGTAAAAAACCAACAATTGTGACACCAATTTATGGTGAT
CAATATTTAAATGCAGCTGCATTAAAAGAACGTGGAATGGGTGTGATTTTGAATTATGAT
GAGCTTAGTGAAGAAAAAATTTATGAAAGTATTGTTGAAATTTTAAAACCGAGCTACAAA
GAAGCAGCAGAAAAAGTGTCAAATTCCTTCAAAAATCGTCTAACAAGTCCATTAGAAACC
GCAATCTATTGGATCGAATATTTAGCAAATACTGATGGAAATTTAATAAAATCACATGCA
GTAGAATTAAATTATTTCACTTATCACTCATTTGATGTTCTTTTATTTATTTTCATTTTA
ATTTTCTTACCAATTTTTCTCATTTTTAAATTTTTTAAATCAAAAAAATCACCAGAAAAT
GAAAGAAAGTTGAAAATAAAAAAAACTAAATAA
>g15774.t4 Gene=g15774 Length=415
MNEGTEACEAFFNSDHISTLFDLNKEKKFEILITEYFNTDCVLGLAYKLNITKFIGMSSC
ALMPWHYERIGLPQTPSYIPNEFVGFSSKMNFHERLVNWLVVTLTKIGYRYQQIIDNARV
KKYLGDEIPDLNDLAKTTNLLFVNQHFSISGVKPFPASVIEIGGVHIKESKNTLPNDIQK
ILNNAKHGVLYVSWGSIISPTGMPEDKKQNIVNAFKKLPQTILWKWENDSVTATAKNIHI
RNWFPQTDILCHEKVVAFLSHGGMMGVSEAVHCKKPTIVTPIYGDQYLNAAALKERGMGV
ILNYDELSEEKIYESIVEILKPSYKEAAEKVSNSFKNRLTSPLETAIYWIEYLANTDGNL
IKSHAVELNYFTYHSFDVLLFIFILIFLPIFLIFKFFKSKKSPENERKLKIKKTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15774.t4 | CDD | cd03784 | GT1_Gtf-like | 20 | 332 | 6.4596E-52 |
| 5 | g15774.t4 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 169 | 337 | 9.9E-45 |
| 2 | g15774.t4 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 3 | 388 | 3.8E-153 |
| 3 | g15774.t4 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 3 | 388 | 3.8E-153 |
| 1 | g15774.t4 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 20 | 398 | 5.1E-64 |
| 7 | g15774.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 377 | - |
| 8 | g15774.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 397 | - |
| 6 | g15774.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 398 | 415 | - |
| 11 | g15774.t4 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 243 | 286 | - |
| 4 | g15774.t4 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 6 | 357 | 5.93E-84 |
| 10 | g15774.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 397 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
