General information for g15778.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15778 is located on chr_4: 6766494..6767905 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15778 | g15778.t3 | isoform | g15778.t3 | 6766494 | 6767905 |
| chr_4 | g15778 | g15778.t3 | exon | g15778.t3.exon1 | 6766494 | 6767783 |
| chr_4 | g15778 | g15778.t3 | cds | g15778.t3.CDS1 | 6766631 | 6767200 |
| chr_4 | g15778 | g15778.t3 | exon | g15778.t3.exon2 | 6767837 | 6767905 |
| chr_4 | g15778 | g15778.t3 | TTS | g15778.t3 | 6768928 | 6768928 |
| chr_4 | g15778 | g15778.t3 | TSS | g15778.t3 | NA | NA |
Sequences
>g15778.t3 Gene=g15778 Length=1359
TATTTTCATGGATACTTTATGCAGGTTCAAGGTATTTCACTGAAGTTTTAACTCTTGGTA
GTTCAACATTGCCAGCATTTGCAAGAAAAGAAGCCGAAGGTTTTGCTTTTATTAGCATTG
ACAAAGAAGAATTTTTAATGCAAAATTTCAGTGATAATTCAGAATACGACAGCAGTTATA
GTTTGAGACATCTAAAAGAACAAGTAACAGTACATCAATTTAATCAACTTATTTATTGTA
GTCTTGTTGGTATTCAAATTGTCATTCGTGGTTATTACATGGAATTTAATAATTATTTCA
AAGAATTTTTGCCTCAAGCTTTTCATCGATTTATTTTTGAATCAAGCAAATATGTTTCAG
CTCAAAAATGTAGAATTTTAACTTTGCCAGCTGATGCTACAATTCCATCACATAATAACA
TTTGCAGAATTGATTTTATTGATGACCATCAAATTTATATCAAATGCAATGTTGATATTC
CAAGCAAACCACCAGCATTGATGACAAAAATTTTAAATGCTGTCGATGAAAAACTTTTCT
CGAATCACACAATGTATAAATTTGTGCAAGCATTAGTTGAAGAGTGGAAAAATAAAATAA
TTTGTTTGTCACATCAGCATGATCATGATGTATCGAAGCTGAAGAAAGTGTTGGGAATTC
AACAAAATGATGAACTGTTGGTTAGCTATTGGTTGAGTGTTCTCTAGTCAAAAATAATTT
AAACCTTAAAAATCTGTAGATTTAGCGATTTTAAATTTGAAATCAGGGTTGAGGAATATT
TTACAATTGATCCTGATTATTCGGAATCAAATTGCTTTCACAATTTTAGCTTTAAATAAA
AAATAAAATTTAAACAAAAATATTTTATTAAAATTTTCCAGCTAATGATCGAAAAACGTA
ATTATTAACAAAAGCCCAAAATGGCATTGAAATTGAATTTTCAAGCTTGCAAGGAAATGA
AATGATTGATGAAAATGGTGAAAAGTTGAAACGATCGCTAAAGACAATTACAGCTTCATT
TCGTCTCATAATTGTGATGATGAAAAGTATAAATCCAAGAAGGAATTTAATTCCATAATT
AAGTCCATATTTTATGAAATAAACTTGATTCTGACGGTCATTTGTTTTTGATACTATTTC
TGCTTCAATTTTGTTTATTTTTCTTTCAAGTTTGACATATTCGATGTAATTATCCTTCAT
TGAAGTCTGTTGAAGTTGCAATTTTAGATTTTTAAATTCATTTTTTAAGGTCTTGACTTG
TTCTGTATCACCAAGGAAGAAACTTTCAATCGGTGCTAAAATTTGTTTCAAAAAAGCAAT
TAGAAATGTCAAAATGCTGACAATAAATATCAAATGCAT
>g15778.t3 Gene=g15778 Length=189
MQNFSDNSEYDSSYSLRHLKEQVTVHQFNQLIYCSLVGIQIVIRGYYMEFNNYFKEFLPQ
AFHRFIFESSKYVSAQKCRILTLPADATIPSHNNICRIDFIDDHQIYIKCNVDIPSKPPA
LMTKILNAVDEKLFSNHTMYKFVQALVEEWKNKIICLSHQHDHDVSKLKKVLGIQQNDEL
LVSYWLSVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g15778.t3 | Gene3D | G3DSA:3.40.50.12430 | - | 11 | 126 | 0 |
| 2 | g15778.t3 | PANTHER | PTHR31441 | FOLLICULIN FAMILY MEMBER | 13 | 188 | 0 |
| 1 | g15778.t3 | Pfam | PF16692 | Folliculin C-terminal domain | 15 | 93 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
