General information for g15785.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lactoylglutathione lyase.
Parent gene
- The parent gene g15785 is located on chr_4: 6775310..6776119 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15785 | g15785.t11 | TTS | g15785.t11 | 6774938 | 6774938 |
| chr_4 | g15785 | g15785.t11 | isoform | g15785.t11 | 6774939 | 6775629 |
| chr_4 | g15785 | g15785.t11 | exon | g15785.t11.exon1 | 6774939 | 6775309 |
| chr_4 | g15785 | g15785.t11 | cds | g15785.t11.CDS1 | 6775049 | 6775309 |
| chr_4 | g15785 | g15785.t11 | exon | g15785.t11.exon2 | 6775389 | 6775629 |
| chr_4 | g15785 | g15785.t11 | cds | g15785.t11.CDS2 | 6775389 | 6775550 |
| chr_4 | g15785 | g15785.t11 | TSS | g15785.t11 | 6776004 | 6776004 |
Sequences
>g15785.t11 Gene=g15785 Length=612
AGGCTTAACGGATGCTGAAGCAAATGCACTTTGCCGTCCATTTGATGGCTCAACTAAGGA
TTTTCTCTTCCAACAAACAATGTATCGCATCAAAGATCCAAGAAAAACACTTCCATTTTA
CTCTGAAGTGCTTGGCATGACACTTTTAGTCAAATTGGATTTTCCTGAAGCTAAATTTTC
TCTCTATTTTATGGGATATGAAAATCCTGCTGATGTTCCAAGTGATCCAGCTAAAAGAAA
AGCAACTGTTGAATTGACTCACAATTGGGGAACTGAAGATGATCCAAATCAAAGTTATCA
TAATGGCAATAATGATCCACGTGGATTTGGACACATTGGCATTATGGTTCCAAATGTTGA
AGAAGCTTGTGCACGATTTGAGAAATTTGGTGTTGAATTTGTTAAGAAACCAAACGATGG
TCGCATGAAAGGACTTGCTTTTATTAAAGATCCAGATGGCTACTGGATTGAAATTTTCAA
TGCTGGAACTGTGCCATGCTGAAAACATTTCATGTAAAAATGTGAAACTTTTAAGTATCC
ACATCTGTTGATTTCTATTTTTAGACAAACAACACTGAAAACATATTTGAGAAAAAATAA
ACAAATCAAAGA
>g15785.t11 Gene=g15785 Length=140
MYRIKDPRKTLPFYSEVLGMTLLVKLDFPEAKFSLYFMGYENPADVPSDPAKRKATVELT
HNWGTEDDPNQSYHNGNNDPRGFGHIGIMVPNVEEACARFEKFGVEFVKKPNDGRMKGLA
FIKDPDGYWIEIFNAGTVPC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15785.t11 | CDD | cd07233 | GlxI_Zn | 1 | 133 | 0.000 |
| 5 | g15785.t11 | Gene3D | G3DSA:3.10.180.10 | 2 | 1 | 137 | 0.000 |
| 2 | g15785.t11 | PANTHER | PTHR10374:SF30 | LACTOYLGLUTATHIONE LYASE | 1 | 137 | 0.000 |
| 3 | g15785.t11 | PANTHER | PTHR10374 | LACTOYLGLUTATHIONE LYASE GLYOXALASE I | 1 | 137 | 0.000 |
| 1 | g15785.t11 | Pfam | PF00903 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 2 | 132 | 0.000 |
| 7 | g15785.t11 | ProSiteProfiles | PS51819 | Vicinal oxygen chelate (VOC) domain profile. | 1 | 135 | 25.583 |
| 4 | g15785.t11 | SUPERFAMILY | SSF54593 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 2 | 135 | 0.000 |
| 6 | g15785.t11 | TIGRFAM | TIGR00068 | glyox_I: lactoylglutathione lyase | 1 | 137 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004462 | lactoylglutathione lyase activity | MF |
| GO:0046872 | metal ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K01759 (lactoylglutathione lyase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed