Gene loci information

Transcript annotation

  • This transcript has been annotated as Lactoylglutathione lyase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15785 g15785.t9 isoform g15785.t9 6774847 6776119
chr_4 g15785 g15785.t9 exon g15785.t9.exon1 6774847 6774939
chr_4 g15785 g15785.t9 exon g15785.t9.exon2 6775030 6775309
chr_4 g15785 g15785.t9 cds g15785.t9.CDS1 6775049 6775309
chr_4 g15785 g15785.t9 exon g15785.t9.exon3 6775368 6775645
chr_4 g15785 g15785.t9 cds g15785.t9.CDS2 6775368 6775634
chr_4 g15785 g15785.t9 exon g15785.t9.exon4 6775929 6776119
chr_4 g15785 g15785.t9 TSS g15785.t9 6776004 6776004
chr_4 g15785 g15785.t9 TTS g15785.t9 NA NA

Sequences

>g15785.t9 Gene=g15785 Length=842
TTTAAAATATTTTTTTAACTTTTCGTGATTTTAAAATTGAAAAATTTTCTTTTTTGTAAA
CAAACCGAGATGATAAAATTTCTGTTGAATTTAGAAACTTCGAAAACAGCTGATTAGATA
AAAATAAAAACTTTTTGCCGACAATTGTTAGTTTTTTGTCTTATCAATATTCTTCATTTG
GATTTTGATCGAAACATAAAAAATGTCAGGCTTAACGGATGCTGAAGCAAATGCACTTTG
CCGTCCATTTGATGGCTCAACTAAGGATTTTCTCTTCCAACAAACAATGTATCGCATCAA
AGATCCAAGAAAAACACTTCCATTTTACTCTGAAGTGCTTGGCATGACACTTTTAGTCAA
ATTGGATTTTCCTGAAGCTAAATTTTCTCTCTATTTTATGGGATATGAAAATCCTGCTGA
TGTTCCAAGTGATCCAGCTAAAAGAAAAGTTTGGGCAATGTCAAGAAAGGCAACTGTTGA
ATTGACTCACAATTGGGGAACTGAAGATGATCCAAATCAAAGTTATCATAATGGCAATAA
TGATCCACGTGGATTTGGACACATTGGCATTATGGTTCCAAATGTTGAAGAAGCTTGTGC
ACGATTTGAGAAATTTGGTGTTGAATTTGTTAAGAAACCAAACGATGGTCGCATGAAAGG
ACTTGCTTTTATTAAAGATCCAGATGGCTACTGGATTGAAATTTTCAATGCTGGAACTGT
GCCATGCTGAAAACATTTCATGTAAAAATAAAATATTGGGAAAATTGATTTTTCTTTACT
TCGGCGCTATTGAATTTTCATTAAAAGATTTACTTTTTCTTTAATATTTAAATTTATTTT
AT

>g15785.t9 Gene=g15785 Length=175
MSGLTDAEANALCRPFDGSTKDFLFQQTMYRIKDPRKTLPFYSEVLGMTLLVKLDFPEAK
FSLYFMGYENPADVPSDPAKRKVWAMSRKATVELTHNWGTEDDPNQSYHNGNNDPRGFGH
IGIMVPNVEEACARFEKFGVEFVKKPNDGRMKGLAFIKDPDGYWIEIFNAGTVPC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15785.t9 CDD cd07233 GlxI_Zn 25 168 4.03492E-97
5 g15785.t9 Gene3D G3DSA:3.10.180.10 2 1 172 6.9E-67
2 g15785.t9 PANTHER PTHR10374:SF30 LACTOYLGLUTATHIONE LYASE 12 172 1.6E-80
3 g15785.t9 PANTHER PTHR10374 LACTOYLGLUTATHIONE LYASE GLYOXALASE I 12 172 1.6E-80
1 g15785.t9 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 27 167 4.2E-19
7 g15785.t9 ProSitePatterns PS00934 Glyoxalase I signature 1. 27 48 -
8 g15785.t9 ProSiteProfiles PS51819 Vicinal oxygen chelate (VOC) domain profile. 24 170 24.857
4 g15785.t9 SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 24 170 2.89E-34
9 g15785.t9 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 16 172 5.1E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004462 lactoylglutathione lyase activity MF
GO:0046872 metal ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values