General information for g15811.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable chitinase 2.
Parent gene
- The parent gene g15811 is located on chr_4: 6840016..6842963 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15811 | g15811.t1 | isoform | g15811.t1 | 6840016 | 6842963 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon1 | 6840016 | 6840216 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS1 | 6840016 | 6840216 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon2 | 6840871 | 6841023 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS2 | 6840871 | 6841023 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon3 | 6841140 | 6841434 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS3 | 6841140 | 6841434 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon4 | 6841488 | 6841642 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS4 | 6841488 | 6841642 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon5 | 6842048 | 6842077 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS5 | 6842048 | 6842077 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon6 | 6842223 | 6842332 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS6 | 6842223 | 6842332 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon7 | 6842516 | 6842764 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS7 | 6842516 | 6842764 |
| chr_4 | g15811 | g15811.t1 | exon | g15811.t1.exon8 | 6842891 | 6842963 |
| chr_4 | g15811 | g15811.t1 | cds | g15811.t1.CDS8 | 6842891 | 6842963 |
| chr_4 | g15811 | g15811.t1 | TSS | g15811.t1 | 6842999 | 6842999 |
| chr_4 | g15811 | g15811.t1 | TTS | g15811.t1 | NA | NA |
Sequences
>g15811.t1 Gene=g15811 Length=1266
ATGAAAATTTTTATTTTCTTGATTTTTTGTGGAATTTTTGGAGTTTTTAGTGATGATAGA
AAATGTAGTGAAGCAACATCAAAGAAAATTTTTTGCTATTATCAAAGTTCATCAGCTTTA
AATTCTTCATTTAATGAAAATTTTTATAATTATCCACCGCCTTGTACTCACATAATTTTT
GCATTTGCTGGCTTGGACATTAATGGAAAAATTGTTTTGTCACAAAATCATCAAATTGAA
ACACAAATTGAAAAAGAAATTTTTAATTTGATAAAATTAAAAGAGAAACGTGAATGCTTA
AAAATTCTGATTTCTGTAGGAGGTTATGACGAAGGAAGTGAAAAATTTTCATCATTAGTC
GAAACAGATGATTCAATTGAAAAGTTTTCTAATAATGTATTGAAATTTCTCATATTTTAT
GGCTTTGATGGGATTGACATTCATTGGATGTATCCAACAATGCGAGGTGGAATTCCAGAA
GATCGCTTGAATTTTGTGAAGCTTTTGAAAGTCTTGAAACAAAAATTAAACAAAAGAAAT
AAACTTGTAGTTGCAGCATTAGGAGCAAAATCAAGTCTAATATCGTCAGCTTATGAACCA
ATCAAAAATATTTGCGACACTTTAGATTATGCACTTTTTATGACATATGATTATAATGAT
CGTCATAAAACATCAATAAATGCTCCATTGTTGCAAGATAATGAAGTTCAACATAAAGAA
ACAATCAATGAAAACATTCAAAAGCTTTTAGCTGAAGGCTGTGATGAGAAAAAAATTATT
TTGGGAATTTCAACATATGGAAAAGTTTACAAGTTAAAATATGCATTTGAAAATTTTTTA
GGAGCAAATGCAAATGAAATGAATGATTTTCATGAAAATAAAATTGATGGTGGAAATGTT
GAATATGAAAAGATTTGTAATGCATTAAACAACAATGTTTCAATATTCAACAATCACAAG
CATACAATGTGGACAATACAAAAATTAACAAATAGTCATTCAAAGTATGCTTTTCATGAT
AGATTTTGGATTTCATATGATGATCATGAAACTGTAGACATAAAAACACTTTATGCTCTT
TCAAAGAATCTCAATGGTTTGATGTTCTTCACAATAAATGGTGATGGAAATTGTGTTCTT
AATTTTCCTCTTATTAATAGTGCACATAAAATTATTAAAGAATATGAAAAACATTGTCAT
AATTTAAGCTCACAAATTTGTGTTAAGAAATTGGCAAAAAATCATGAAATACAAATTAAT
TTTTAA
>g15811.t1 Gene=g15811 Length=421
MKIFIFLIFCGIFGVFSDDRKCSEATSKKIFCYYQSSSALNSSFNENFYNYPPPCTHIIF
AFAGLDINGKIVLSQNHQIETQIEKEIFNLIKLKEKRECLKILISVGGYDEGSEKFSSLV
ETDDSIEKFSNNVLKFLIFYGFDGIDIHWMYPTMRGGIPEDRLNFVKLLKVLKQKLNKRN
KLVVAALGAKSSLISSAYEPIKNICDTLDYALFMTYDYNDRHKTSINAPLLQDNEVQHKE
TINENIQKLLAEGCDEKKIILGISTYGKVYKLKYAFENFLGANANEMNDFHENKIDGGNV
EYEKICNALNNNVSIFNNHKHTMWTIQKLTNSHSKYAFHDRFWISYDDHETVDIKTLYAL
SKNLNGLMFFTINGDGNCVLNFPLINSAHKIIKEYEKHCHNLSSQICVKKLAKNHEIQIN
F
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15811.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 32 | 375 | 8.6E-76 |
| 7 | g15811.t1 | Gene3D | G3DSA:3.10.50.10 | - | 265 | 346 | 8.6E-76 |
| 2 | g15811.t1 | PANTHER | PTHR11177 | CHITINASE | 21 | 399 | 5.4E-63 |
| 1 | g15811.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 29 | 375 | 4.5E-58 |
| 9 | g15811.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 10 | g15811.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 11 | g15811.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 12 | g15811.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 8 | g15811.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 421 | - |
| 4 | g15811.t1 | SMART | SM00636 | 2g34 | 28 | 375 | 4.6E-55 |
| 3 | g15811.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 28 | 390 | 3.33E-60 |
| 5 | g15811.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed