Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 6a9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15817 g15817.t2 TTS g15817.t2 6867357 6867357
chr_4 g15817 g15817.t2 isoform g15817.t2 6867472 6869192
chr_4 g15817 g15817.t2 exon g15817.t2.exon1 6867472 6867638
chr_4 g15817 g15817.t2 cds g15817.t2.CDS1 6867472 6867638
chr_4 g15817 g15817.t2 exon g15817.t2.exon2 6868258 6868394
chr_4 g15817 g15817.t2 cds g15817.t2.CDS2 6868258 6868394
chr_4 g15817 g15817.t2 exon g15817.t2.exon3 6868537 6868936
chr_4 g15817 g15817.t2 cds g15817.t2.CDS3 6868537 6868793
chr_4 g15817 g15817.t2 exon g15817.t2.exon4 6869191 6869192
chr_4 g15817 g15817.t2 TSS g15817.t2 6869787 6869787

Sequences

>g15817.t2 Gene=g15817 Length=706
TGGTTCATTTGGATTTGGGATTGAAATAAATTCCCTTGAGCATCCTGATACTGAATTTAG
AGTTCGTGGAAGTCAGGTTTTTGAAAAGCCAAAATATCCACCAATATTTTTTCAATTTTG
TGTGAATTTCAAACCTTTAGCACGAATGCTTAAAATTAGCACCACTGCTAAAGAAATTGA
GGAATTTTTTACAAGAATTGTAAAAGAAACAATTGAATATCGTGAAAAAAATCAAATAAT
TCGAAATGATTTTATGAATTTGTTGATACAATTGAAAAATTTTGGGAAACTTGAAGGAGA
CATAACAAGTATAGGAAAATTGACATTAAATGAAATTGTTGCTCAATGTTTTATCTTTTT
TGCTGCTGGATATGAAACAAGTTCAACTACAATGGCTTATGCTTTATTTGAGTTAGCATT
GAACCAAAATATTCAAGATAAGGCGAGAGATAATGTAAGAAAAATATTGAGCAAATATGA
TGGAAAGTTTACATATGAAGGTCTTATGGAAATGGATTATGTTGACATGTGTGTTAATGG
ACTTCGCTTTGGACAAATTCAAGCAAAAGTTGGACTGGCAATGTTGCTAAATAATTTCAA
ATTTGAGCTGTCGGACAAGACTCAAAATCCATTGAAATTTAGAAAAGATACAATAGTTAT
GCTTATTGCTGAAGGTGGAATTCATTTGAAAGTTACCAAAATATAA

>g15817.t2 Gene=g15817 Length=186
MLKISTTAKEIEEFFTRIVKETIEYREKNQIIRNDFMNLLIQLKNFGKLEGDITSIGKLT
LNEIVAQCFIFFAAGYETSSTTMAYALFELALNQNIQDKARDNVRKILSKYDGKFTYEGL
MEMDYVDMCVNGLRFGQIQAKVGLAMLLNNFKFELSDKTQNPLKFRKDTIVMLIAEGGIH
LKVTKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g15817.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 131 0.0e+00
7 g15817.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 132 186 1.8e-05
3 g15817.t2 PANTHER PTHR24292 CYTOCHROME P450 2 131 0.0e+00
5 g15817.t2 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 2 131 0.0e+00
2 g15817.t2 PANTHER PTHR24292 CYTOCHROME P450 129 186 0.0e+00
4 g15817.t2 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 129 186 0.0e+00
1 g15817.t2 Pfam PF00067 Cytochrome P450 8 131 0.0e+00
6 g15817.t2 SUPERFAMILY SSF48264 Cytochrome P450 4 184 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed