Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 6a22.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15817 g15817.t4 isoform g15817.t4 6868837 6869724
chr_4 g15817 g15817.t4 exon g15817.t4.exon1 6868837 6868936
chr_4 g15817 g15817.t4 cds g15817.t4.CDS1 6868839 6868936
chr_4 g15817 g15817.t4 exon g15817.t4.exon2 6869191 6869724
chr_4 g15817 g15817.t4 cds g15817.t4.CDS2 6869191 6869470
chr_4 g15817 g15817.t4 TSS g15817.t4 6869787 6869787
chr_4 g15817 g15817.t4 TTS g15817.t4 NA NA

Sequences

>g15817.t4 Gene=g15817 Length=634
CAATTTCGTTTGTATTGATTTTTTGGTTTGTTAAAAATCGTTTTAATTATTGGAAAAATC
AAAATGTTCCTTTTCTTCAACCAAAATTTCCCTATGGAAATATCAAAGGATTTGGTAAAA
ACTTTCATCAATTTGAATTTCAACAAAAAATCTACGAAATTTATAAGAAGAAACTTTCGC
CATTTGTTGGTCTTTATTATTACATTCAACCAGTTGTTTTATGCACAGACTTGGAATTTA
TCAAAAATATTTTCATGCGTGATTCTGCTTATTTTCTTGATCGTGGCGCTTATTACAATG
AAAAAGACAATCCAATTTCAGCACATCTATTTAATCTTGACAATCCAAAATGGAAAATAT
TAAGGAACAAATTAACGCCAACTTTTACATCAGGAAAGATCAAGACAATGTTTTTTACTC
TTTGTGATGTTGGTGAAAGATTGGTGAAAAAATTAGAAAAAGAAGTAGAAATTGCAGATG
ATGGAATTTTAGAAATGAAGGAATTTTCTGCCAGATTTACAACTGATGTTATTGGTTCAT
TTGGATTTGGGATTGAAATAAATTCCCTTGAGCATCCTGATACTGAATTTAGAGTTCGTG
GAAGTCAGGTTTTTGAAAAGCCAAAATATCCACC

>g15817.t4 Gene=g15817 Length=126
MRDSAYFLDRGAYYNEKDNPISAHLFNLDNPKWKILRNKLTPTFTSGKIKTMFFTLCDVG
ERLVKKLEKEVEIADDGILEMKEFSARFTTDVIGSFGFGIEINSLEHPDTEFRVRGSQVF
EKPKYP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15817.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 125 0
2 g15817.t4 PANTHER PTHR24292 CYTOCHROME P450 2 123 0
3 g15817.t4 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 2 123 0
4 g15817.t4 PRINTS PR00464 Group II E-class P450 signature 30 50 0
5 g15817.t4 PRINTS PR00464 Group II E-class P450 signature 87 105 0
1 g15817.t4 Pfam PF00067 Cytochrome P450 9 110 0
6 g15817.t4 SUPERFAMILY SSF48264 Cytochrome P450 3 121 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed