General information for g15824.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15824 is located on chr_4: 6909580..6911161 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15824 | g15824.t1 | TSS | g15824.t1 | 6907307 | 6907307 |
| chr_4 | g15824 | g15824.t1 | isoform | g15824.t1 | 6907542 | 6909928 |
| chr_4 | g15824 | g15824.t1 | exon | g15824.t1.exon1 | 6907542 | 6907883 |
| chr_4 | g15824 | g15824.t1 | cds | g15824.t1.CDS1 | 6907542 | 6907883 |
| chr_4 | g15824 | g15824.t1 | exon | g15824.t1.exon2 | 6908288 | 6908911 |
| chr_4 | g15824 | g15824.t1 | cds | g15824.t1.CDS2 | 6908288 | 6908911 |
| chr_4 | g15824 | g15824.t1 | exon | g15824.t1.exon3 | 6908971 | 6909808 |
| chr_4 | g15824 | g15824.t1 | cds | g15824.t1.CDS3 | 6908971 | 6909808 |
| chr_4 | g15824 | g15824.t1 | exon | g15824.t1.exon4 | 6909873 | 6909928 |
| chr_4 | g15824 | g15824.t1 | cds | g15824.t1.CDS4 | 6909873 | 6909928 |
| chr_4 | g15824 | g15824.t1 | TTS | g15824.t1 | 6910875 | 6910875 |
Sequences
>g15824.t1 Gene=g15824 Length=1860
ATGGAGGGAATGTCTCCAAATTTCCAAAGTGCCAATGCGGCAATGCTCCAAATGAGTAAT
TATGCCAACATTCCTACTCAGCCTCAGCAGCAGCAAAATAGTACCCCAGAATTAACACCA
CAGAAGAAAGCTGTCTTTGAGCGACTAAAAAAGCGCATGAATTTGTACAGAAAACGACAA
GCGGACATTGTACCAAGATTTGATCAGAATTTTAGTAATATATGTGAGCAGCAAAGCATC
GAGACAAATTTACTACAGAAAAAGTTCCTCGAAAGCAAGGCCAAGCGAGTTGCAAAAAAA
ACTGACAAAAAGCAAATCGAGGGAGTTAGCGGAACAATTGTGTCAAAGACACAAAAACGT
CCAGCACCAGATGACCTCGAAAATGATCCAGACCTTCATCCACCCGCAAAAATTCCAACA
ACACAACAAAATTCACAGTCACATGATAACAATATGAAATTTCAAGTAGAAATAGTCCAA
CAGCTTGAATTTACCACAAATGTCGCAAACATGCAGCCACAGCAAATAAGTACAAATGTG
ACAGTTAAAACGACCACAAATGGCTCACTTACGACCAAATATGAACCTCAAGATATGAAA
CAGAAAATGAATGAGCCCGCAAAGATGCCAACAATGGCACCATTACCACCAGCACCATTA
CCAGATATACTGCAAGACTTTAAACAAGAACCTGATAATGAATTTGCAGATTTAGATTTT
GGCAATATGGCAAATTTCATGGCAAATGATGAAAATGAATTGAAAAAATTATTTTCAAAT
ATTTCGGAAGTTTTTGACCAATCAGATTTGTTTGATGACACAAAGCATATAAAGCAGGAG
CCAATGGTAAAACCACAGATGCCACAAATGCATCAACAACTTCCACAAATTCCACCAATG
ATCCAAAATAATGGAAATATGCAAATGGTTGGAAATCAATTTAATCAATATGTGATGCAG
GACAATTCTCAAATGCAAATGAAACAACAAATAATGCAGCAACAACAACAAACAATGCAA
GCACAACAGCAACAACCAATGAGAATGTACCAACAGCAGCAACAACCTCCACAGCCTCAA
CAACAGCCACTACCTGATATAACACCCGCCGCACAAACACTTAAAAACATGGCACAACAG
CATCAAGTTAAATCATCAATGGCAATGAATTATATGCGACCACAAATGCAACAACAAGTT
CCACAACAGCAACCAATGATGAATAATCGTATGCCAACTTATCAGCAACAAAATTATGAC
AATTATAGTCAATTTAGTCAACTAAAGCAGTCACAACAAATGAACTTGCCATTCACACCT
GATATGATTAAACAAGAGCTGCTTTTGCCACAACAGCAACCACAGCAACAAATGATGAGT
GGAATGAATATGAAACCAATGATGAATCATCAAATGATGCATGAGGAACCAAAAATGCAT
CAAAATTACCAAAATTTTCAGACACAACAGCAGCAACAATTTATGGCACAACAACAGCAG
TCAAGAAATTTCAATCAGGGTCAAAATATGAATATTCATATGAAGCAAACACAAATGATG
CATATACAGCAACAAAGTGGAATGGGTGGCAATGTGCAAATGCAAGGTGGTCAACATATG
GGCATGAGCATGAATGACGGAACTTTTAGTATGCAACAGCAGCAAAATATGTACTTTAAT
CAACATCATACGCATCAACCAAACACACATCCAAATTATGGCATGCAACAGGCAATGCAG
CAGCAACAACAAAAAAGACAACAACAACATCATCCACAAGGTGGACCACATGTTATGGGT
GAGGGACCAACAAATACTTATAATATGATGCAAAGCCAATCAATGAGTTTCACACAGTGA
>g15824.t1 Gene=g15824 Length=619
MEGMSPNFQSANAAMLQMSNYANIPTQPQQQQNSTPELTPQKKAVFERLKKRMNLYRKRQ
ADIVPRFDQNFSNICEQQSIETNLLQKKFLESKAKRVAKKTDKKQIEGVSGTIVSKTQKR
PAPDDLENDPDLHPPAKIPTTQQNSQSHDNNMKFQVEIVQQLEFTTNVANMQPQQISTNV
TVKTTTNGSLTTKYEPQDMKQKMNEPAKMPTMAPLPPAPLPDILQDFKQEPDNEFADLDF
GNMANFMANDENELKKLFSNISEVFDQSDLFDDTKHIKQEPMVKPQMPQMHQQLPQIPPM
IQNNGNMQMVGNQFNQYVMQDNSQMQMKQQIMQQQQQTMQAQQQQPMRMYQQQQQPPQPQ
QQPLPDITPAAQTLKNMAQQHQVKSSMAMNYMRPQMQQQVPQQQPMMNNRMPTYQQQNYD
NYSQFSQLKQSQQMNLPFTPDMIKQELLLPQQQPQQQMMSGMNMKPMMNHQMMHEEPKMH
QNYQNFQTQQQQQFMAQQQQSRNFNQGQNMNIHMKQTQMMHIQQQSGMGGNVQMQGGQHM
GMSMNDGTFSMQQQQNMYFNQHHTHQPNTHPNYGMQQAMQQQQQKRQQQHHPQGGPHVMG
EGPTNTYNMMQSQSMSFTQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g15824.t1 | Coils | Coil | Coil | 325 | 345 | - |
| 5 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 42 | - |
| 6 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 40 | - |
| 4 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 129 | - |
| 8 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 357 | - |
| 9 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 363 | - |
| 3 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 602 | - |
| 7 | g15824.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 591 | - |
| 1 | g15824.t1 | Pfam | PF09596 | MamL-1 domain | 40 | 96 | 4.5E-17 |
| 2 | g15824.t1 | SMART | SM01275 | MamL_1_2 | 40 | 99 | 1.1E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003713 | transcription coactivator activity | MF |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | BP |
| GO:0016607 | nuclear speck | CC |
| GO:0007219 | Notch signaling pathway | BP |
KEGG
Orthology
- This transcript has been annotated with K06061 (mastermind)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
