General information for g15831.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15831 is located on chr_4: 6960734..6961859 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15831 | g15831.t3 | TTS | g15831.t3 | 6953958 | 6953958 |
| chr_4 | g15831 | g15831.t3 | isoform | g15831.t3 | 6953960 | 6955995 |
| chr_4 | g15831 | g15831.t3 | exon | g15831.t3.exon1 | 6953960 | 6954891 |
| chr_4 | g15831 | g15831.t3 | cds | g15831.t3.CDS1 | 6954784 | 6954891 |
| chr_4 | g15831 | g15831.t3 | exon | g15831.t3.exon2 | 6955341 | 6955451 |
| chr_4 | g15831 | g15831.t3 | cds | g15831.t3.CDS2 | 6955341 | 6955451 |
| chr_4 | g15831 | g15831.t3 | exon | g15831.t3.exon3 | 6955506 | 6955995 |
| chr_4 | g15831 | g15831.t3 | cds | g15831.t3.CDS3 | 6955506 | 6955619 |
| chr_4 | g15831 | g15831.t3 | TSS | g15831.t3 | NA | NA |
Sequences
>g15831.t3 Gene=g15831 Length=1533
ATGACAACAAATACAAAAGCAATTACTGAGTGCAGCAGCTGCTGTTGGATCATTTACAGT
AAATAAATAAAATTGTTTGAGAATTTTTTATGTTTCTAAAATTCAAGATTGTAAAATTTT
CCAAATTTTTAATTTAAAGAATTTTTTTATTTTATATAAAAAATTTTTTCATTTCAAATT
TATAAAAATTCTTTAAAATTTTCTAGCCAAAAATCAGGGCATCGCAATAACAAAAAACAC
AGCATCAACGACACTTCATCCCGATCATTCACATCATCCCGCATATACGTCATCACATTC
ACCACAGTCAAGCACGAGAGTCAGCGTGGAGTCGACATCGATCAATGGCTTTCAAACAAA
TCGCAGTGAGCTTGACATGGCGATGCTGCAAATTTTAGATCCGCACTTGAGACCCATTCC
ACCTGCCAATGATCCAACATCACAGAGAATTTACAAAGAACATCTTGATTTGGCTCAAGA
ATATTTCAAAACACAGACAGATATGGCATATTTGGCTGAAAATAAAAAGAAAATTCTTCA
AAAAATGACACCAGAAGAACAAAAAAATCGATTAGAAATTTGTAATAAATTAAGAGAAAA
AGAATCACTATTGAAATTAGAAGCTACTTTAAGGCAACAACTTGAAATGGTAAAAAATCA
ACAAAATAATCATGATAATGTTAATGAAGAAGGTTTTTGTATGCTATGATAATAACGTAC
AAAAAATATTAAAATTTGGCAAAAATTAAAGCTTTTGCCTAAACATTTATTATAAGAATT
TTAATGTAGAAAATTTTATTTAAATTTTGTGAAATTTCTTATACCATTTTTATTAAAATT
TATGCAAAAACCAAAGTTTTAATAAATATTATTGATCATATTTGTTATTGATACGAAAAA
TTTATAAAAGTCAAATTTAAATAAATTAAATTAAATAAGTAAAGAAATTCTCTTTTTCTG
ATATAATTTTAAAATTATTTTTAGTTTATAAACATGCAAAATTTTATCAAAAAAACCACT
ACATTTTATAGCCCAACATTTATCATAATATAATTCTATACAATACAGATTCATGATGGT
TCAATTTTATTAAAAAAGATCGCCAACTGAAAACAAAACTTTTAAAATATTTATATTAGT
GAAATTTATTAAAATATACTTTTGAAAAGTCTTATCTTAGTATCTTTTAAAAATGAATTT
CAAATTAAAAACTATTTTTTATGTAAAATTGAAGACAAGATCAAAAACCGCATTCAAAGT
TCATCACATGTCAAATTTATATGGGAGTTCAAAAGTTTATTTAATTAAATCAAATGAATT
TTTTATAATTTAAAATTCAAATAAAAAACTTCACAAAATTTATTAAAAAATTTCCTACTT
TAAATATTTTCATATTTAAGAAGAAAAAGATATGTAAACAGTGTGATTATTACTTTTGCT
TAGAAAAGAAACAAAAATTTATTTTATAAATACTTTGTAGTTTATTAGAATAGTAAAAAA
ATGTTTGACAATAAAATTTATAATAAAAAACCT
>g15831.t3 Gene=g15831 Length=110
MAMLQILDPHLRPIPPANDPTSQRIYKEHLDLAQEYFKTQTDMAYLAENKKKILQKMTPE
EQKNRLEICNKLREKESLLKLEATLRQQLEMVKNQQNNHDNVNEEGFCML
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g15831.t3 | Coils | Coil | Coil | 75 | 105 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
