General information for g15831.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15831 is located on chr_4: 6960734..6961859 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15831 | g15831.t4 | isoform | g15831.t4 | 6954377 | 6956925 |
| chr_4 | g15831 | g15831.t4 | exon | g15831.t4.exon1 | 6954377 | 6954891 |
| chr_4 | g15831 | g15831.t4 | cds | g15831.t4.CDS1 | 6954784 | 6954891 |
| chr_4 | g15831 | g15831.t4 | exon | g15831.t4.exon2 | 6955341 | 6955451 |
| chr_4 | g15831 | g15831.t4 | cds | g15831.t4.CDS2 | 6955341 | 6955451 |
| chr_4 | g15831 | g15831.t4 | exon | g15831.t4.exon3 | 6955506 | 6955789 |
| chr_4 | g15831 | g15831.t4 | cds | g15831.t4.CDS3 | 6955506 | 6955789 |
| chr_4 | g15831 | g15831.t4 | exon | g15831.t4.exon4 | 6955938 | 6956220 |
| chr_4 | g15831 | g15831.t4 | cds | g15831.t4.CDS4 | 6955938 | 6955995 |
| chr_4 | g15831 | g15831.t4 | TTS | g15831.t4 | 6956027 | 6956027 |
| chr_4 | g15831 | g15831.t4 | exon | g15831.t4.exon5 | 6956816 | 6956925 |
| chr_4 | g15831 | g15831.t4 | TSS | g15831.t4 | 6957056 | 6957056 |
Sequences
>g15831.t4 Gene=g15831 Length=1303
TGAAGAAAATTTTGTGATAAAAGAAAATTTATGAATTTTAAATGGTGTCAGAAAAGGAAC
AATAAATGAAAGACACAATTAAGCGGAAAAAATGACTCAATGATTAATTATAATTCAAAG
AAGAAGAAAAAATTTAAAATAAACAAAAAACTGCAGAATATTTTTTTACAACCTTACTGT
GATTATTTTAGTTTCTTTTTCTTTATTTTTCCTTCAAAATATTTTTACACTCATGACTAA
AAATATTATGAAAATTTGTTTTGTGTTGTGAGAAAAAAAGACTTTAATAAAATTTTATAA
AAAGAAAAGAAGAAAAAAATAAAATTAGAAAAGAAATGACAACAAATACAAAAGCAATTA
CTGAGTGCAGCAGCTGCTGTTGGATCATTTACACCAAAAATCAGGGCATCGCAATAACAA
AAAACACAGCATCAACGACACTTCATCCCGATCATTCACATCATCCCGCATATACGTCAT
CACATTCACCACAGTCAAGCACGAGAGTCAGCGTGGAGTCGACATCGATCAATGGCTTTC
AAACAAATCGCAGTGAGCTTGACATGGCGATGCTGCAAATTTTAGATCCGCACTTGAGAC
CCATTCCACCTGCCAATGATCCAACATCACAGAGAATTTACAAAGAACATCTTGATTTGG
CTCAAGAATATTTCAAAACACAGACAGATATGGCATATTTGGCTGAAAATAAAAAGAAAA
TTCTTCAAAAAATGACACCAGAAGAACAAAAAAATCGATTAGAAATTTGTAATAAATTAA
GAGAAAAAGAATCACTATTGAAATTAGAAGCTACTTTAAGGCAACAACTTGAAATGGTAA
AAAATCAACAAAATAATCATGATAATGTTAATGAAGAAGGTTTTTGTATGCTATGATAAT
AACGTACAAAAAATATTAAAATTTGGCAAAAATTAAAGCTTTTGCCTAAACATTTATTAT
AAGAATTTTAATGTAGAAAATTTTATTTAAATTTTGTGAAATTTCTTATACCATTTTTAT
TAAAATTTATGCAAAAACCAAAGTTTTAATAAATATTATTGATCATATTTGTTATTGATA
CGAAAAATTTATAAAAGTCAAATTTAAATAAATTAAATTAAATAAGTAAAGAAATTCTCT
TTTTCTGATATAATTTTAAAATTATTTTTAGTTTATAAACATGCAAAATTTTATCAAAAA
AACCACTACATTTTATAGCCCAACATTTATCATAATATAATTCTATACAATACAGATTCA
TGATGGTTCAATTTTATTAAAAAAGATCGCCAACTGAAAACAA
>g15831.t4 Gene=g15831 Length=186
MTTNTKAITECSSCCWIIYTKNQGIAITKNTASTTLHPDHSHHPAYTSSHSPQSSTRVSV
ESTSINGFQTNRSELDMAMLQILDPHLRPIPPANDPTSQRIYKEHLDLAQEYFKTQTDMA
YLAENKKKILQKMTPEEQKNRLEICNKLREKESLLKLEATLRQQLEMVKNQQNNHDNVNE
EGFCML
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g15831.t4 | Coils | Coil | Coil | 151 | 181 | - |
| 1 | g15831.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 57 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
