General information for g15887.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15887 is located on chr_4: 7185001..7186037 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15887 | g15887.t2 | isoform | g15887.t2 | 7185001 | 7186037 |
| chr_4 | g15887 | g15887.t2 | exon | g15887.t2.exon1 | 7185001 | 7185422 |
| chr_4 | g15887 | g15887.t2 | cds | g15887.t2.CDS1 | 7185003 | 7185422 |
| chr_4 | g15887 | g15887.t2 | exon | g15887.t2.exon2 | 7185498 | 7186037 |
| chr_4 | g15887 | g15887.t2 | cds | g15887.t2.CDS2 | 7185498 | 7186037 |
| chr_4 | g15887 | g15887.t2 | TSS | g15887.t2 | 7186173 | 7186173 |
| chr_4 | g15887 | g15887.t2 | TTS | g15887.t2 | NA | NA |
Sequences
>g15887.t2 Gene=g15887 Length=962
ATGGACATAAAATCAAATGAATTTAAAGCAATCGAAACATTGTGGAAAACTCTTGATGAC
AGTTCAATAATTCGTGATGTTCTTTTTAAAGGAAAATACATTTCAAATGCCATCAAATTT
ATCAGTGAACGAAATCAAATCACAATCGATGAAGCCAAAGAATCTTTTTTACAAATATGT
GACAATATTGTCAATATTCTCATCCAAAATAAACAACTTTATCGTGCCAGTCATGTTCTC
AAAAATGCACAAATCAATGAACTTCATTATTTATTTGATCTTCATCAAAAGACTGATGAT
GAAAAAAAGAAATCAATCATTATTGAATATTTACAAAAGATAAAAGAAAATTTTGATGAT
GATTTAAATGAATTGGAAGCTTTTCACATTTGTTACAAAATGCTACAGGAAAACTTTTAC
ACTCATATGAAATATTTAGAAACTACAAATAAAAATCATAATAATTATGTTGTGACAGTA
AATAACATTGAAAAATTATCATTTCCAACGTATATGAAGCAATCATTGGCATGGAGAAAA
GAAATAGCAGTGGACATTTTCTTCAAATCCCAAACAGACACTGAAATTCTCAAAATAATT
CCAATTCTCAACAAGTCAATATTTTTCGGATATCTTCTTCAAAATCGACTCACAGGACTT
CTTCGTACATGGCTAAACGAACAATATTGCTCCATGGCAGGACAAACCATTCGATCAACT
TTAAATTCACCACAAAATTTTGATGAAGCTTTAAATTTTCTTTTTCGAAAGTGGACATTC
GAACCATTTATGATGAATCAAATTACAAGAAAAGAGAAAGAAGTGATAAAAAATGAATTT
GCAAAACTTGGACTTTTTGAAAATCGTGAAGTGAAACAAATTGATCGAAAATTAAACCGA
TTTTTTACAACTCATACTTTTCATGAAAATTACACGACATTAAAAAGTGATGAAATTACA
AA
>g15887.t2 Gene=g15887 Length=320
MDIKSNEFKAIETLWKTLDDSSIIRDVLFKGKYISNAIKFISERNQITIDEAKESFLQIC
DNIVNILIQNKQLYRASHVLKNAQINELHYLFDLHQKTDDEKKKSIIIEYLQKIKENFDD
DLNELEAFHICYKMLQENFYTHMKYLETTNKNHNNYVVTVNNIEKLSFPTYMKQSLAWRK
EIAVDIFFKSQTDTEILKIIPILNKSIFFGYLLQNRLTGLLRTWLNEQYCSMAGQTIRST
LNSPQNFDEALNFLFRKWTFEPFMMNQITRKEKEVIKNEFAKLGLFENREVKQIDRKLNR
FFTTHTFHENYTTLKSDEIT
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
