General information for g15894.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15894 is located on chr_4: 7201690..7203778 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15894 | g15894.t2 | TTS | g15894.t2 | 7199965 | 7199965 |
| chr_4 | g15894 | g15894.t2 | isoform | g15894.t2 | 7200004 | 7200561 |
| chr_4 | g15894 | g15894.t2 | exon | g15894.t2.exon1 | 7200004 | 7200503 |
| chr_4 | g15894 | g15894.t2 | cds | g15894.t2.CDS1 | 7200004 | 7200492 |
| chr_4 | g15894 | g15894.t2 | exon | g15894.t2.exon2 | 7200557 | 7200561 |
| chr_4 | g15894 | g15894.t2 | TSS | g15894.t2 | NA | NA |
Sequences
>g15894.t2 Gene=g15894 Length=505
GCTTTATTCTGAAGGAATGCCACTTGTAATTCCAAATTATGACACAAAAGTTTATGATAC
ATGCAAGAAACATGCAGATTTGTGGGCATCGCAACCAACCAGTGCTATAAAAACTTCATC
AATCATTAAAGAAAAATTGACAAGCATTCAAAAAATTGAGCTTCTTTCTGAGCTTCTCGA
TAAGCCAGAAATTGTTGATTTAACAGCAGAAAAAGTTGATCTTTTGACTGAAACTTATGA
AATGTCACGAAATGTTACTAAAAATTCTGAAATTCGTTTCCGTCTCATGCGATTGGTAAT
CAAAGCGCGTTTGGAACGTTTTGATGAAATTTTTGAATTTGCAAATAGCAATTTTAGAAT
GAAATTTGTGCGACCAATTTATCGTGATTTAGCTGGATGGGATGTTGGAAAACCATTGGC
AATTGAGAATTTCAAGAAAGTTCGCGATGAAATGATGAAAGTTTGTGCTTATGCTGTTGC
TAAAGATTTGGGAATTGAAAATTGA
>g15894.t2 Gene=g15894 Length=162
MPLVIPNYDTKVYDTCKKHADLWASQPTSAIKTSSIIKEKLTSIQKIELLSELLDKPEIV
DLTAEKVDLLTETYEMSRNVTKNSEIRFRLMRLVIKARLERFDEIFEFANSNFRMKFVRP
IYRDLAGWDVGKPLAIENFKKVRDEMMKVCAYAVAKDLGIEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15894.t2 | Gene3D | G3DSA:1.25.40.320 | - | 11 | 161 | 0 |
| 2 | g15894.t2 | PANTHER | PTHR45726 | - | 1 | 158 | 0 |
| 3 | g15894.t2 | PANTHER | PTHR45726:SF3 | LEUKOTRIENE A-4 HYDROLASE | 1 | 158 | 0 |
| 1 | g15894.t2 | Pfam | PF09127 | Leukotriene A4 hydrolase, C-terminal | 42 | 158 | 0 |
| 5 | g15894.t2 | SMART | SM01263 | Leuk_A4_hydro_C_2 | 11 | 158 | 0 |
| 4 | g15894.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 12 | 160 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008237 | metallopeptidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
