General information for g15916.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Elongation of very long chain fatty acids protein 7.
Parent gene
- The parent gene g15916 is located on chr_4: 7403293..7404617 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15916 | g15916.t1 | isoform | g15916.t1 | 7403293 | 7404617 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon1 | 7403293 | 7403459 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS1 | 7403293 | 7403459 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon2 | 7403514 | 7403676 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS2 | 7403514 | 7403676 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon3 | 7403741 | 7403912 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS3 | 7403741 | 7403912 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon4 | 7404079 | 7404206 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS4 | 7404079 | 7404206 |
| chr_4 | g15916 | g15916.t1 | TSS | g15916.t1 | 7404106 | 7404106 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon5 | 7404268 | 7404375 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS5 | 7404268 | 7404375 |
| chr_4 | g15916 | g15916.t1 | exon | g15916.t1.exon6 | 7404540 | 7404617 |
| chr_4 | g15916 | g15916.t1 | cds | g15916.t1.CDS6 | 7404540 | 7404617 |
| chr_4 | g15916 | g15916.t1 | TTS | g15916.t1 | 7404673 | 7404673 |
Sequences
>g15916.t1 Gene=g15916 Length=816
ATGACAAGTTTGATAATAAAAAATATTTTTGATTATTTTAATTATTTGGAATCTCTTAGT
GATCCTCGACCAAAAGGATGGTTTATGGTTGATTCACCATTTCCCACTTTATTTTGGTTA
TTTATGTATTTTTTGATGGTTTGGATTGGACCTAAAATTATGCAAAATCGTAAACCATTC
AAAATCAGAAAATTTCTGGCATTTTATAGTTTTTCTTTAGCTGTTCAAAGTTTTTACATT
TCCTATAAATATATCACTGCAGCTTATAGATTAAATTATAATTTATATTGTGAATTAAGT
GTACCATTGTGGACACCTGATGATATGCAAATTGTTAAAACAACTTGGATTCTTTACATG
ACAAAACTTGTTGAACTCAGTGATACACTTTTCTTTATTTTAAGAAAAAAAGATAAGCAA
TTATCTTTTTTGCATGTTTATCATCATTCAATAACATTTTTCTCAGCATGGATTGGTATT
AAGTTTATACCAAGTGGAACAATTGCGACAGGTGCAGCAGTTAATTCATTAGTTCACGTT
CACATGTATATTTACTATGGTTTGGCAGCTCTTGGAGTAGAAGCTAAAAAGATTCTTTGG
CTTAAAAAATATGTGACAACTTTACAATTGATTCAATTTGTTGCTTTTGCTTTCTTTGGT
ATAAAAGCATATTTTATTGGCTGTAAATTTCCATCATTGATGATTAAATTCTTTTGTATA
AACGTTTTACTTTTCTGTGTACTTTTTGGACAATTTTATGTAAAAGAATACATAAAAGAT
TGCAGAACAACAAAAAATGAAAGTAAAAATAAATAA
>g15916.t1 Gene=g15916 Length=271
MTSLIIKNIFDYFNYLESLSDPRPKGWFMVDSPFPTLFWLFMYFLMVWIGPKIMQNRKPF
KIRKFLAFYSFSLAVQSFYISYKYITAAYRLNYNLYCELSVPLWTPDDMQIVKTTWILYM
TKLVELSDTLFFILRKKDKQLSFLHVYHHSITFFSAWIGIKFIPSGTIATGAAVNSLVHV
HMYIYYGLAALGVEAKKILWLKKYVTTLQLIQFVAFAFFGIKAYFIGCKFPSLMIKFFCI
NVLLFCVLFGQFYVKEYIKDCRTTKNESKNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g15916.t1 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 5 | 265 | 1.6E-74 |
| 3 | g15916.t1 | PANTHER | PTHR11157:SF12 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 4 | 5 | 265 | 1.6E-74 |
| 1 | g15916.t1 | Pfam | PF01151 | GNS1/SUR4 family | 29 | 260 | 2.1E-55 |
| 19 | g15916.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 35 | - |
| 23 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 54 | - |
| 12 | g15916.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 55 | 65 | - |
| 22 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 85 | - |
| 18 | g15916.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 86 | 115 | - |
| 26 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 116 | 134 | - |
| 14 | g15916.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 135 | 140 | - |
| 20 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 160 | - |
| 17 | g15916.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 161 | 171 | - |
| 24 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 172 | 193 | - |
| 13 | g15916.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 194 | 204 | - |
| 25 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 227 | - |
| 16 | g15916.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 228 | 232 | - |
| 21 | g15916.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 254 | - |
| 15 | g15916.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 255 | 271 | - |
| 11 | g15916.t1 | ProSitePatterns | PS01188 | ELO family signature. | 141 | 149 | - |
| 5 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 27 | 49 | - |
| 6 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 87 | - |
| 9 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 134 | - |
| 4 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 160 | - |
| 10 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 170 | 192 | - |
| 7 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 227 | - |
| 8 | g15916.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 232 | 254 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed