General information for g15924.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RalA-binding protein 1.
Parent gene
- The parent gene g15924 is located on chr_4: 7434873..7437120 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15924 | g15924.t2 | isoform | g15924.t2 | 7434873 | 7436603 |
| chr_4 | g15924 | g15924.t2 | exon | g15924.t2.exon1 | 7434873 | 7435157 |
| chr_4 | g15924 | g15924.t2 | cds | g15924.t2.CDS1 | 7434873 | 7435157 |
| chr_4 | g15924 | g15924.t2 | exon | g15924.t2.exon2 | 7435213 | 7435660 |
| chr_4 | g15924 | g15924.t2 | cds | g15924.t2.CDS2 | 7435213 | 7435660 |
| chr_4 | g15924 | g15924.t2 | exon | g15924.t2.exon3 | 7436039 | 7436603 |
| chr_4 | g15924 | g15924.t2 | cds | g15924.t2.CDS3 | 7436039 | 7436154 |
| chr_4 | g15924 | g15924.t2 | TSS | g15924.t2 | 7437205 | 7437205 |
| chr_4 | g15924 | g15924.t2 | TTS | g15924.t2 | NA | NA |
Sequences
>g15924.t2 Gene=g15924 Length=1298
ATATTCAGCCAATTTTTGGTGTTTCTCTTGGACTTTCAGTTGAAAGATCTCGCTGTCATG
ATGGAGTCAAACTTCCACTTGTAGTTCGTGATTGTATCGATTATTTACAAGAAAATTTAA
CATCCGAACAAATTTACAAAGTTGAAGGCGTAAAAACTCGAGTTCAACATTTGAAAAAAA
TTTACAACAATCGTGAAGCTCGTAATGAAGAATTTGATGTTCCAACAGCTTCATCACTTT
TAAAAACTTTCATTCAAGAACTTCCAGAGCCAATTTTGACAACTGAATTGATTACAAGAT
TTGAAGAAGTTTCATCTTTACCTGATGTTACACAACAAGCTAAAGAACTCGAACAATTAA
TTGAACAACTGCCAAAATGCAATCAAGTTTTACTCGCTTGGCTTTCGCGGCATTTTTCTG
AAGTTATTAACAATGGAAAAGCAAACAAGATGAATGCACAAAATTTATCAGTTTTACTAT
CGCCGATTTTACAAATGTCACATCGATTGCTGATGATTATTTTGTGCCATGCTGAGACAC
TTTTTGCTGATGTTCAACTTCACAAATACATCCCACCGATAGCTGCAAGCACAAGTCCAA
ATTTACCCGAAACAGTTGAAGAAATTCAATTTGAACTTCGAAAGCAAGAAAGTTTCCTTA
ATCAAATTCATTCTGAAATGAATGCTGGTTTTGTAACAAAGAAACGTGAAGAAGATTTAT
GGGAAACACAAAGAATCATCACACAATTGAAAAGAAAATTGAGAACTTTTGAGAAAAAAC
ATGATTCAATGCAAAAAAGTATGGATGCAGATGCAATTGAGGAAACCATAGATTTCACTT
TAAGAAAACCTGAAAATGATGAAAATCCTGTAAGTGGTGATGGAACTGAAGATTCAAAAG
AAACCAGTGATGAAAATAGTGACAAAATTTATATGATGGACAATGGAATGATTATGTTAC
CTAAAGATCATCCTGATTATGCAATGCTTATTAAATTACAGCTTGAAAATCAGGAACTAA
TGAATTGGAAACAACAATTGCAATCAAAAATCTCTCTAGAACGTGCTGAATGTGTTTGTT
TAAAAACAATTCTTGATAATCAACAACCACCTGTTGCTAATACCAATGAAAATCAAAATA
TCGATGAATCTGAATATGAAAAACTCATTGAACATTACATGAAAGAAAATTCATTGCTTG
AACAAAAAAGATTGTTACTTGCAAAGGAAATTTTTGATGAAAATTTGTCACTTATTCAAC
TTCAAGTTGAACTCGCCATGAAACAATTTCTGCATTGA
>g15924.t2 Gene=g15924 Length=282
MNAQNLSVLLSPILQMSHRLLMIILCHAETLFADVQLHKYIPPIAASTSPNLPETVEEIQ
FELRKQESFLNQIHSEMNAGFVTKKREEDLWETQRIITQLKRKLRTFEKKHDSMQKSMDA
DAIEETIDFTLRKPENDENPVSGDGTEDSKETSDENSDKIYMMDNGMIMLPKDHPDYAML
IKLQLENQELMNWKQQLQSKISLERAECVCLKTILDNQQPPVANTNENQNIDESEYEKLI
EHYMKENSLLEQKRLLLAKEIFDENLSLIQLQVELAMKQFLH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g15924.t2 | Coils | Coil | Coil | 97 | 117 | - |
| 5 | g15924.t2 | Coils | Coil | Coil | 233 | 253 | - |
| 3 | g15924.t2 | Gene3D | G3DSA:1.20.58.90 | - | 45 | 106 | 9.3E-27 |
| 2 | g15924.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 158 | - |
| 1 | g15924.t2 | PANTHER | PTHR12783 | RALA BINDING PROTEIN 1 RALBP1 | 1 | 279 | 4.5E-50 |
| 7 | g15924.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 28 | - |
| 8 | g15924.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 9 | g15924.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
| 10 | g15924.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 28 | - |
| 6 | g15924.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 29 | 282 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0005096 | GTPase activator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
