General information for g15934.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable transaldolase.
Parent gene
- The parent gene g15934 is located on chr_4: 7472545..7477457 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15934 | g15934.t3 | TSS | g15934.t3 | 7470532 | 7470532 |
| chr_4 | g15934 | g15934.t3 | isoform | g15934.t3 | 7470541 | 7472740 |
| chr_4 | g15934 | g15934.t3 | exon | g15934.t3.exon1 | 7470541 | 7470643 |
| chr_4 | g15934 | g15934.t3 | cds | g15934.t3.CDS1 | 7470541 | 7470643 |
| chr_4 | g15934 | g15934.t3 | exon | g15934.t3.exon2 | 7471515 | 7471638 |
| chr_4 | g15934 | g15934.t3 | cds | g15934.t3.CDS2 | 7471515 | 7471638 |
| chr_4 | g15934 | g15934.t3 | exon | g15934.t3.exon3 | 7472365 | 7472740 |
| chr_4 | g15934 | g15934.t3 | cds | g15934.t3.CDS3 | 7472365 | 7472740 |
| chr_4 | g15934 | g15934.t3 | TTS | g15934.t3 | 7473418 | 7473418 |
Sequences
>g15934.t3 Gene=g15934 Length=603
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGCACAATTGAAGAA
CAAGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAAGGTG
ATTCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGCAAGC
ATTAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAAAGATCGA
ATTTTGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCTTGAAAGT
GAACATGGAATTCACTGTAATCTCACATTGTTGTTTAGTTTTGCACAAGCTGTTGCATGT
GCTGAGGCCAAAGTTACATTGATCTCACCATTTGTTGGAAGAATTTTGGATTGGTATAAG
AAA
>g15934.t3 Gene=g15934 Length=201
MSIEANQPNKKVTMSVLDQLKEVTTIVADTGDFEAIKEFKPTDATTNPSLILSAAKIEKY
SKVIDQAVDYALENASTIEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDAS
IKKAIKFIEAYEALGIKKDRILIKLASTWEGIEAARILESEHGIHCNLTLLFSFAQAVAC
AEAKVTLISPFVGRILDWYKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15934.t3 | Coils | Coil | Coil | 196 | 201 | - |
| 7 | g15934.t3 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 9 | 201 | 8.7E-88 |
| 2 | g15934.t3 | PANTHER | PTHR10683:SF18 | TRANSALDOLASE | 15 | 201 | 2.8E-91 |
| 3 | g15934.t3 | PANTHER | PTHR10683 | TRANSALDOLASE | 15 | 201 | 2.8E-91 |
| 1 | g15934.t3 | Pfam | PF00923 | Transaldolase/Fructose-6-phosphate aldolase | 26 | 200 | 2.5E-61 |
| 5 | g15934.t3 | ProSitePatterns | PS01054 | Transaldolase signature 1. | 43 | 51 | - |
| 6 | g15934.t3 | ProSitePatterns | PS00958 | Transaldolase active site. | 141 | 158 | - |
| 4 | g15934.t3 | SUPERFAMILY | SSF51569 | Aldolase | 14 | 201 | 8.48E-73 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006098 | pentose-phosphate shunt | BP |
| GO:0004801 | transaldolase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
