Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable transaldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15934 g15934.t32 TSS g15934.t32 7470532 7470532
chr_4 g15934 g15934.t32 isoform g15934.t32 7471508 7473302
chr_4 g15934 g15934.t32 exon g15934.t32.exon1 7471508 7471642
chr_4 g15934 g15934.t32 cds g15934.t32.CDS1 7471632 7471642
chr_4 g15934 g15934.t32 exon g15934.t32.exon2 7472365 7472743
chr_4 g15934 g15934.t32 cds g15934.t32.CDS2 7472365 7472743
chr_4 g15934 g15934.t32 exon g15934.t32.exon3 7472898 7473302
chr_4 g15934 g15934.t32 cds g15934.t32.CDS3 7472898 7473302
chr_4 g15934 g15934.t32 TTS g15934.t32 7473418 7473418

Sequences

>g15934.t32 Gene=g15934 Length=919
ATTTTAGCAATCAAAGAGTTTAAACCAACAGACGCAACAACCAACCCTTCGCTTATATTA
TCTGCAGCAAAAATTGAAAAATACTCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTT
GAAAATGCAAGGTCACACAATTGAAGAACAAGTAGCAGAAGCAGCTGATCAACTCTTTGT
TCTCTTTGGTCATGAAATTCTCAAGGTGATTCCCGGTCGCGTTTCAACTGAAGTTGATGC
ACGTCTCTCATTTGATCGCGATGCAAGCATTAAAAAGGCAATAAAATTTATTGAAGCTTA
TGAAGCACTTGGAATTAAAAAAGATCGAATTTTGATCAAACTTGCATCAACATGGGAAGG
AATTGAAGCTGCAAGAATTCTTGAAAGTGAACATGGAATTCACTGTAATCTCACATTGTT
GTTTAGTTTTGCACAAGCTGTTGCATGTGCTGAGGCCAAAGTTACATTGATCTCACCATT
TGTTGGAAGAATTTTGGATTGGTATAAGAAAAATAACCCTTCAGTAACTTATGCTGGACC
AACTGACCCAGGTGTCATTTCAGTCACAAACATTTACAATTACTACAAGAAATTCGATTA
CAAAACTACCGTCATGGGTGCTTCATTCCGCAATGTTGGTGAAATCAGAGAACTTGCTGG
TTGTGATTTGCTCACAATTAGTCCAGCATTGTTAAAAGAACTTGATTCTTCCAATGAGAA
AATATCCATCAAACTTACACCAGAAAGTGCAAAAGATTCAAAACTTGCTCGTATTTCAAT
GAATGAACAAGTTTTCCGTTGGATGTTAAATGAAGATCAAATGGCAACAGAGAAATTGAG
TGAAGGAATCAGAAATTTTGCTGCTGATTCAGTCAAATTGGAAAATTTGTTGAGAGAAAA
AATTGAAGCAAGAAAGTAA

>g15934.t32 Gene=g15934 Length=264
MQGHTIEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDASIKKAIKFIEAYE
ALGIKKDRILIKLASTWEGIEAARILESEHGIHCNLTLLFSFAQAVACAEAKVTLISPFV
GRILDWYKKNNPSVTYAGPTDPGVISVTNIYNYYKKFDYKTTVMGASFRNVGEIRELAGC
DLLTISPALLKELDSSNEKISIKLTPESAKDSKLARISMNEQVFRWMLNEDQMATEKLSE
GIRNFAADSVKLENLLREKIEARK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g15934.t32 CDD cd00957 Transaldolase_TalAB 2 256 3.51691E-151
6 g15934.t32 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 264 9.4E-114
2 g15934.t32 PANTHER PTHR10683:SF18 TRANSALDOLASE 5 260 4.2E-126
3 g15934.t32 PANTHER PTHR10683 TRANSALDOLASE 5 260 4.2E-126
1 g15934.t32 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 7 255 1.9E-84
5 g15934.t32 ProSitePatterns PS00958 Transaldolase active site. 69 86 -
4 g15934.t32 SUPERFAMILY SSF51569 Aldolase 4 260 7.12E-95
7 g15934.t32 TIGRFAM TIGR00874 talAB: transaldolase 2 260 3.7E-123

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0004801 transaldolase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed