General information for g15934.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable transaldolase.
Parent gene
- The parent gene g15934 is located on chr_4: 7472545..7477457 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15934 | g15934.t6 | TSS | g15934.t6 | 7470532 | 7470532 |
| chr_4 | g15934 | g15934.t6 | isoform | g15934.t6 | 7470541 | 7473302 |
| chr_4 | g15934 | g15934.t6 | exon | g15934.t6.exon1 | 7470541 | 7470643 |
| chr_4 | g15934 | g15934.t6 | exon | g15934.t6.exon2 | 7471515 | 7471642 |
| chr_4 | g15934 | g15934.t6 | cds | g15934.t6.CDS1 | 7471632 | 7471642 |
| chr_4 | g15934 | g15934.t6 | exon | g15934.t6.exon3 | 7472371 | 7472743 |
| chr_4 | g15934 | g15934.t6 | cds | g15934.t6.CDS2 | 7472371 | 7472743 |
| chr_4 | g15934 | g15934.t6 | exon | g15934.t6.exon4 | 7472898 | 7473302 |
| chr_4 | g15934 | g15934.t6 | cds | g15934.t6.CDS3 | 7472898 | 7473302 |
| chr_4 | g15934 | g15934.t6 | TTS | g15934.t6 | 7473418 | 7473418 |
Sequences
>g15934.t6 Gene=g15934 Length=1009
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGGTCATGAAGAACA
AGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAAGGTGAT
TCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGCAAGCAT
TAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAAAGATCGAAT
TTTGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCTTGAAAGTGA
ACATGGAATTCACTGTAATCTCACATTGTTGTTTAGTTTTGCACAAGCTGTTGCATGTGC
TGAGGCCAAAGTTACATTGATCTCACCATTTGTTGGAAGAATTTTGGATTGGTATAAGAA
AAATAACCCTTCAGTAACTTATGCTGGACCAACTGACCCAGGTGTCATTTCAGTCACAAA
CATTTACAATTACTACAAGAAATTCGATTACAAAACTACCGTCATGGGTGCTTCATTCCG
CAATGTTGGTGAAATCAGAGAACTTGCTGGTTGTGATTTGCTCACAATTAGTCCAGCATT
GTTAAAAGAACTTGATTCTTCCAATGAGAAAATATCCATCAAACTTACACCAGAAAGTGC
AAAAGATTCAAAACTTGCTCGTATTTCAATGAATGAACAAGTTTTCCGTTGGATGTTAAA
TGAAGATCAAATGGCAACAGAGAAATTGAGTGAAGGAATCAGAAATTTTGCTGCTGATTC
AGTCAAATTGGAAAATTTGTTGAGAGAAAAAATTGAAGCAAGAAAGTAA
>g15934.t6 Gene=g15934 Length=262
MQGHEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDASIKKAIKFIEAYEAL
GIKKDRILIKLASTWEGIEAARILESEHGIHCNLTLLFSFAQAVACAEAKVTLISPFVGR
ILDWYKKNNPSVTYAGPTDPGVISVTNIYNYYKKFDYKTTVMGASFRNVGEIRELAGCDL
LTISPALLKELDSSNEKISIKLTPESAKDSKLARISMNEQVFRWMLNEDQMATEKLSEGI
RNFAADSVKLENLLREKIEARK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15934.t6 | CDD | cd00957 | Transaldolase_TalAB | 4 | 254 | 9.2961E-151 |
| 6 | g15934.t6 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 262 | 1.3E-113 |
| 2 | g15934.t6 | PANTHER | PTHR10683:SF18 | TRANSALDOLASE | 4 | 258 | 5.3E-126 |
| 3 | g15934.t6 | PANTHER | PTHR10683 | TRANSALDOLASE | 4 | 258 | 5.3E-126 |
| 1 | g15934.t6 | Pfam | PF00923 | Transaldolase/Fructose-6-phosphate aldolase | 5 | 253 | 1.9E-84 |
| 5 | g15934.t6 | ProSitePatterns | PS00958 | Transaldolase active site. | 67 | 84 | - |
| 4 | g15934.t6 | SUPERFAMILY | SSF51569 | Aldolase | 5 | 258 | 1.57E-94 |
| 7 | g15934.t6 | TIGRFAM | TIGR00874 | talAB: transaldolase | 4 | 258 | 8.0E-123 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006098 | pentose-phosphate shunt | BP |
| GO:0004801 | transaldolase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
- This transcript has been annotated with K00616 (transaldolase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
