General information for g1594.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetyl-D-glucosamine kinase.
Parent gene
- The parent gene g1594 is located on chr_3: 12054418..12055535 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1594 | g1594.t1 | TSS | g1594.t1 | 12053189 | 12053189 |
| chr_3 | g1594 | g1594.t1 | isoform | g1594.t1 | 12053430 | 12055337 |
| chr_3 | g1594 | g1594.t1 | exon | g1594.t1.exon1 | 12053430 | 12053461 |
| chr_3 | g1594 | g1594.t1 | cds | g1594.t1.CDS1 | 12053430 | 12053461 |
| chr_3 | g1594 | g1594.t1 | exon | g1594.t1.exon2 | 12054248 | 12054339 |
| chr_3 | g1594 | g1594.t1 | cds | g1594.t1.CDS2 | 12054248 | 12054339 |
| chr_3 | g1594 | g1594.t1 | exon | g1594.t1.exon3 | 12054406 | 12055337 |
| chr_3 | g1594 | g1594.t1 | cds | g1594.t1.CDS3 | 12054406 | 12055337 |
| chr_3 | g1594 | g1594.t1 | TTS | g1594.t1 | 12055514 | 12055514 |
Sequences
>g1594.t1 Gene=g1594 Length=1056
ATGGATGAAATCTATTTTGCGGGAGTTGAAGGTGGCGCAACTCAATCAGTTTTGATAATT
TCAAATGGCGCTGGAGAAATTCTTGGAAAAGCACATGGTGAATCATCAAATCATTGGATG
ATAGGCATTCCTGAAGTTGCAAAACGAATTAATGCAATGGCATGTGAGGCAAAGGCCAAT
GCGAAAATTCCACAATCAACTAAATTGAAATGTATTGGTTTGAGTTTGTCTGGCTGTGAA
CAAGAATCGACAAATGCAGCACTTGAAAGAGAAATACGTCATTCATATCCAAATCTTGCC
GAAAATTATGTAGTGTGCAGTGACACTATGGGAAGTATTATGACAATTTCGAATCTCGGA
GGATTGGTTGTTATTGCAGGTACTGGTAGTAATGCGGTTTTAAGGAATCCAAATGGAGAA
ACATTTCAATGTGGTGGATGGGGTCACCAATTAGGTGATGAAGGTGGAGCTTGGTTTATC
TCACAAAAACTTGTAAAAACAGTATTTGATCATGAAGATAATTTAGAAAAATGTACTTAT
GACATTACAACTGCATGGAAACTGATCAAAAATCATTTTAAAATTGACACACGTGTCGAT
ATGCTTGAACATTGCTATGCAAAATTCAATAAATCCTTTTATGCTAAGTTGTGTCAAAAA
ATGTCTGTAGCTGCACTTGATGGTGATGAATTATGTAAGAGTATCTTTAATGAAGCTGGA
AGACTTTTGGCTAAAATGATTGTCGCACTCTTGCCTAAAATCTCTCCTGAGCTTGTTAAG
ACTGGCTACTTGAATGTAATTTGTGTTGGTTCAGTATGGATAAGTTGGAATCTTTTGAAA
ACAGGGTTTATCAAAGAGCTTGAAAAACACAACATTCTGTTCGAGTTACGACTTTTAAGA
CTAAAAAGCAACATTTCAATGGCCATCGGTTCAGTCTATATGGCAGCCGACTCTGTGAAA
TTTCCATTGCCAAGAGACTATGAAGAAAATTATGAAATTTTCTTCAATTTTAATGGCAAT
TGTGAGCATTTAAATTTAAATAACAATATTTTGTAA
>g1594.t1 Gene=g1594 Length=351
MDEIYFAGVEGGATQSVLIISNGAGEILGKAHGESSNHWMIGIPEVAKRINAMACEAKAN
AKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNLAENYVVCSDTMGSIMTISNLG
GLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWFISQKLVKTVFDHEDNLEKCTY
DITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQKMSVAALDGDELCKSIFNEAG
RLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLLKTGFIKELEKHNILFELRLLR
LKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNGNCEHLNLNNNIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1594.t1 | Gene3D | G3DSA:3.30.420.40 | - | 6 | 316 | 0 |
| 5 | g1594.t1 | Gene3D | G3DSA:3.30.420.40 | - | 120 | 303 | 0 |
| 2 | g1594.t1 | PANTHER | PTHR12862 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN | 4 | 336 | 0 |
| 1 | g1594.t1 | Pfam | PF01869 | BadF/BadG/BcrA/BcrD ATPase family | 8 | 273 | 0 |
| 3 | g1594.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 112 | 0 |
| 4 | g1594.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 121 | 336 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0045127 | N-acetylglucosamine kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00884 (N-acetylglucosamine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
