Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetyl-D-glucosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1594 g1594.t2 isoform g1594.t2 12051871 12055337
chr_3 g1594 g1594.t2 exon g1594.t2.exon1 12051871 12052025
chr_3 g1594 g1594.t2 exon g1594.t2.exon2 12052090 12052181
chr_3 g1594 g1594.t2 exon g1594.t2.exon3 12053392 12053461
chr_3 g1594 g1594.t2 cds g1594.t2.CDS1 12053430 12053461
chr_3 g1594 g1594.t2 exon g1594.t2.exon4 12054248 12054339
chr_3 g1594 g1594.t2 cds g1594.t2.CDS2 12054248 12054339
chr_3 g1594 g1594.t2 exon g1594.t2.exon5 12054406 12055337
chr_3 g1594 g1594.t2 cds g1594.t2.CDS3 12054406 12055337
chr_3 g1594 g1594.t2 TTS g1594.t2 12055514 12055514
chr_3 g1594 g1594.t2 TSS g1594.t2 NA NA

Sequences

>g1594.t2 Gene=g1594 Length=1341
AGTAGAGAAAGAGAGCTTTTATGAAAAATGTTGAGGTAGGAAAAGGGAGTTGCTCAGAAA
AATACACATAAACGAGTAATTTGATGATGAAAATTATTTTTCGTCATAGTTTTTGTGAAG
CAAAAATTATAAAACTGCTCAGTGAATCTCATTAATCCGATTTATTTCAATAATTAGCAA
TTACAATTTCCTTTGCCGTATATTAGGAAAAATATTTTTTTACTTGCCTGGATGATGGCT
TTAACTTTGTGTTAATTTTAATAAACTAATTTAGATTGACCAATAATGGATGAAATCTAT
TTTGCGGGAGTTGAAGGTGGCGCAACTCAATCAGTTTTGATAATTTCAAATGGCGCTGGA
GAAATTCTTGGAAAAGCACATGGTGAATCATCAAATCATTGGATGATAGGCATTCCTGAA
GTTGCAAAACGAATTAATGCAATGGCATGTGAGGCAAAGGCCAATGCGAAAATTCCACAA
TCAACTAAATTGAAATGTATTGGTTTGAGTTTGTCTGGCTGTGAACAAGAATCGACAAAT
GCAGCACTTGAAAGAGAAATACGTCATTCATATCCAAATCTTGCCGAAAATTATGTAGTG
TGCAGTGACACTATGGGAAGTATTATGACAATTTCGAATCTCGGAGGATTGGTTGTTATT
GCAGGTACTGGTAGTAATGCGGTTTTAAGGAATCCAAATGGAGAAACATTTCAATGTGGT
GGATGGGGTCACCAATTAGGTGATGAAGGTGGAGCTTGGTTTATCTCACAAAAACTTGTA
AAAACAGTATTTGATCATGAAGATAATTTAGAAAAATGTACTTATGACATTACAACTGCA
TGGAAACTGATCAAAAATCATTTTAAAATTGACACACGTGTCGATATGCTTGAACATTGC
TATGCAAAATTCAATAAATCCTTTTATGCTAAGTTGTGTCAAAAAATGTCTGTAGCTGCA
CTTGATGGTGATGAATTATGTAAGAGTATCTTTAATGAAGCTGGAAGACTTTTGGCTAAA
ATGATTGTCGCACTCTTGCCTAAAATCTCTCCTGAGCTTGTTAAGACTGGCTACTTGAAT
GTAATTTGTGTTGGTTCAGTATGGATAAGTTGGAATCTTTTGAAAACAGGGTTTATCAAA
GAGCTTGAAAAACACAACATTCTGTTCGAGTTACGACTTTTAAGACTAAAAAGCAACATT
TCAATGGCCATCGGTTCAGTCTATATGGCAGCCGACTCTGTGAAATTTCCATTGCCAAGA
GACTATGAAGAAAATTATGAAATTTTCTTCAATTTTAATGGCAATTGTGAGCATTTAAAT
TTAAATAACAATATTTTGTAA

>g1594.t2 Gene=g1594 Length=351
MDEIYFAGVEGGATQSVLIISNGAGEILGKAHGESSNHWMIGIPEVAKRINAMACEAKAN
AKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNLAENYVVCSDTMGSIMTISNLG
GLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWFISQKLVKTVFDHEDNLEKCTY
DITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQKMSVAALDGDELCKSIFNEAG
RLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLLKTGFIKELEKHNILFELRLLR
LKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNGNCEHLNLNNNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1594.t2 Gene3D G3DSA:3.30.420.40 - 6 316 0
5 g1594.t2 Gene3D G3DSA:3.30.420.40 - 120 303 0
2 g1594.t2 PANTHER PTHR12862 BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN 4 336 0
1 g1594.t2 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 273 0
3 g1594.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 5 112 0
4 g1594.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 121 336 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0045127 N-acetylglucosamine kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values