Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetyl-D-glucosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1594 g1594.t4 isoform g1594.t4 12053169 12055337
chr_3 g1594 g1594.t4 exon g1594.t4.exon1 12053169 12053306
chr_3 g1594 g1594.t4 TSS g1594.t4 12053189 12053189
chr_3 g1594 g1594.t4 exon g1594.t4.exon2 12053392 12053465
chr_3 g1594 g1594.t4 cds g1594.t4.CDS1 12053434 12053465
chr_3 g1594 g1594.t4 exon g1594.t4.exon3 12054248 12054339
chr_3 g1594 g1594.t4 cds g1594.t4.CDS2 12054248 12054339
chr_3 g1594 g1594.t4 exon g1594.t4.exon4 12054406 12055337
chr_3 g1594 g1594.t4 cds g1594.t4.CDS3 12054406 12055337
chr_3 g1594 g1594.t4 TTS g1594.t4 12055514 12055514

Sequences

>g1594.t4 Gene=g1594 Length=1236
ATATACAAAAAATTTCTCCACATTCTAGTTGAATTCATTTGATCGAACGGACGTGTCTCT
TCTATTAAAGAACAGTTAAAAACTTTTTTATTTTTATTCAAATAAAGTTTTTAATTATTG
TGTGCTAAACTTTAATAGTGTGTTAATTTTAATAAACTAATTTAGATTGACCAATAATGG
ATGAAATCTATTTTGCGGGAGTTGAAGGGTAATGGCGCAACTCAATCAGTTTTGATAATT
TCAAATGGCGCTGGAGAAATTCTTGGAAAAGCACATGGTGAATCATCAAATCATTGGATG
ATAGGCATTCCTGAAGTTGCAAAACGAATTAATGCAATGGCATGTGAGGCAAAGGCCAAT
GCGAAAATTCCACAATCAACTAAATTGAAATGTATTGGTTTGAGTTTGTCTGGCTGTGAA
CAAGAATCGACAAATGCAGCACTTGAAAGAGAAATACGTCATTCATATCCAAATCTTGCC
GAAAATTATGTAGTGTGCAGTGACACTATGGGAAGTATTATGACAATTTCGAATCTCGGA
GGATTGGTTGTTATTGCAGGTACTGGTAGTAATGCGGTTTTAAGGAATCCAAATGGAGAA
ACATTTCAATGTGGTGGATGGGGTCACCAATTAGGTGATGAAGGTGGAGCTTGGTTTATC
TCACAAAAACTTGTAAAAACAGTATTTGATCATGAAGATAATTTAGAAAAATGTACTTAT
GACATTACAACTGCATGGAAACTGATCAAAAATCATTTTAAAATTGACACACGTGTCGAT
ATGCTTGAACATTGCTATGCAAAATTCAATAAATCCTTTTATGCTAAGTTGTGTCAAAAA
ATGTCTGTAGCTGCACTTGATGGTGATGAATTATGTAAGAGTATCTTTAATGAAGCTGGA
AGACTTTTGGCTAAAATGATTGTCGCACTCTTGCCTAAAATCTCTCCTGAGCTTGTTAAG
ACTGGCTACTTGAATGTAATTTGTGTTGGTTCAGTATGGATAAGTTGGAATCTTTTGAAA
ACAGGGTTTATCAAAGAGCTTGAAAAACACAACATTCTGTTCGAGTTACGACTTTTAAGA
CTAAAAAGCAACATTTCAATGGCCATCGGTTCAGTCTATATGGCAGCCGACTCTGTGAAA
TTTCCATTGCCAAGAGACTATGAAGAAAATTATGAAATTTTCTTCAATTTTAATGGCAAT
TGTGAGCATTTAAATTTAAATAACAATATTTTGTAA

>g1594.t4 Gene=g1594 Length=351
MKSILRELKGNGATQSVLIISNGAGEILGKAHGESSNHWMIGIPEVAKRINAMACEAKAN
AKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNLAENYVVCSDTMGSIMTISNLG
GLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWFISQKLVKTVFDHEDNLEKCTY
DITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQKMSVAALDGDELCKSIFNEAG
RLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLLKTGFIKELEKHNILFELRLLR
LKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNGNCEHLNLNNNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1594.t4 Gene3D G3DSA:3.30.420.40 - 12 316 0
6 g1594.t4 Gene3D G3DSA:3.30.420.40 - 120 303 0
2 g1594.t4 PANTHER PTHR12862 BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN 12 336 0
1 g1594.t4 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 12 273 0
4 g1594.t4 SUPERFAMILY SSF53067 Actin-like ATPase domain 12 112 0
3 g1594.t4 SUPERFAMILY SSF53067 Actin-like ATPase domain 121 336 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0045127 N-acetylglucosamine kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values