Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetyl-D-glucosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1594 g1594.t5 isoform g1594.t5 12053169 12055337
chr_3 g1594 g1594.t5 exon g1594.t5.exon1 12053169 12053306
chr_3 g1594 g1594.t5 TSS g1594.t5 12053189 12053189
chr_3 g1594 g1594.t5 exon g1594.t5.exon2 12053419 12053461
chr_3 g1594 g1594.t5 cds g1594.t5.CDS1 12053430 12053461
chr_3 g1594 g1594.t5 exon g1594.t5.exon3 12054248 12054339
chr_3 g1594 g1594.t5 cds g1594.t5.CDS2 12054248 12054339
chr_3 g1594 g1594.t5 exon g1594.t5.exon4 12054406 12055337
chr_3 g1594 g1594.t5 cds g1594.t5.CDS3 12054406 12055337
chr_3 g1594 g1594.t5 TTS g1594.t5 12055514 12055514

Sequences

>g1594.t5 Gene=g1594 Length=1205
ATATACAAAAAATTTCTCCACATTCTAGTTGAATTCATTTGATCGAACGGACGTGTCTCT
TCTATTAAAGAACAGTTAAAAACTTTTTTATTTTTATTCAAATAAAGTTTTTAATTATTG
TGTGCTAAACTTTAATAGATTGACCAATAATGGATGAAATCTATTTTGCGGGAGTTGAAG
GTGGCGCAACTCAATCAGTTTTGATAATTTCAAATGGCGCTGGAGAAATTCTTGGAAAAG
CACATGGTGAATCATCAAATCATTGGATGATAGGCATTCCTGAAGTTGCAAAACGAATTA
ATGCAATGGCATGTGAGGCAAAGGCCAATGCGAAAATTCCACAATCAACTAAATTGAAAT
GTATTGGTTTGAGTTTGTCTGGCTGTGAACAAGAATCGACAAATGCAGCACTTGAAAGAG
AAATACGTCATTCATATCCAAATCTTGCCGAAAATTATGTAGTGTGCAGTGACACTATGG
GAAGTATTATGACAATTTCGAATCTCGGAGGATTGGTTGTTATTGCAGGTACTGGTAGTA
ATGCGGTTTTAAGGAATCCAAATGGAGAAACATTTCAATGTGGTGGATGGGGTCACCAAT
TAGGTGATGAAGGTGGAGCTTGGTTTATCTCACAAAAACTTGTAAAAACAGTATTTGATC
ATGAAGATAATTTAGAAAAATGTACTTATGACATTACAACTGCATGGAAACTGATCAAAA
ATCATTTTAAAATTGACACACGTGTCGATATGCTTGAACATTGCTATGCAAAATTCAATA
AATCCTTTTATGCTAAGTTGTGTCAAAAAATGTCTGTAGCTGCACTTGATGGTGATGAAT
TATGTAAGAGTATCTTTAATGAAGCTGGAAGACTTTTGGCTAAAATGATTGTCGCACTCT
TGCCTAAAATCTCTCCTGAGCTTGTTAAGACTGGCTACTTGAATGTAATTTGTGTTGGTT
CAGTATGGATAAGTTGGAATCTTTTGAAAACAGGGTTTATCAAAGAGCTTGAAAAACACA
ACATTCTGTTCGAGTTACGACTTTTAAGACTAAAAAGCAACATTTCAATGGCCATCGGTT
CAGTCTATATGGCAGCCGACTCTGTGAAATTTCCATTGCCAAGAGACTATGAAGAAAATT
ATGAAATTTTCTTCAATTTTAATGGCAATTGTGAGCATTTAAATTTAAATAACAATATTT
TGTAA

>g1594.t5 Gene=g1594 Length=351
MDEIYFAGVEGGATQSVLIISNGAGEILGKAHGESSNHWMIGIPEVAKRINAMACEAKAN
AKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNLAENYVVCSDTMGSIMTISNLG
GLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWFISQKLVKTVFDHEDNLEKCTY
DITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQKMSVAALDGDELCKSIFNEAG
RLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLLKTGFIKELEKHNILFELRLLR
LKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNGNCEHLNLNNNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1594.t5 Coils Coil Coil 341 351 -
6 g1594.t5 Gene3D G3DSA:3.30.420.40 - 6 316 1.3E-115
5 g1594.t5 Gene3D G3DSA:3.30.420.40 - 120 303 1.3E-115
2 g1594.t5 PANTHER PTHR12862 BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN 4 336 2.1E-99
1 g1594.t5 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 273 2.4E-15
3 g1594.t5 SUPERFAMILY SSF53067 Actin-like ATPase domain 5 112 4.32E-17
4 g1594.t5 SUPERFAMILY SSF53067 Actin-like ATPase domain 121 336 8.43E-49

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0045127 N-acetylglucosamine kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values