Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetyl-D-glucosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1594 g1594.t6 TSS g1594.t6 12053189 12053189
chr_3 g1594 g1594.t6 isoform g1594.t6 12054192 12055337
chr_3 g1594 g1594.t6 exon g1594.t6.exon1 12054192 12054339
chr_3 g1594 g1594.t6 cds g1594.t6.CDS1 12054333 12054339
chr_3 g1594 g1594.t6 exon g1594.t6.exon2 12054406 12055337
chr_3 g1594 g1594.t6 cds g1594.t6.CDS2 12054406 12055337
chr_3 g1594 g1594.t6 TTS g1594.t6 12055514 12055514

Sequences

>g1594.t6 Gene=g1594 Length=1080
TAGATCAAAGTTAAATAACCTTTCACATTCTGTCATGTTTTCATTTTAATAAACAGTGGC
GCAACTCAATCAGTTTTGATAATTTCAAATGGCGCTGGAGAAATTCTTGGAAAAGCACAT
GGTGAATCATCAAATCATTGGATGATAGGCATTCCTGAAGTTGCAAAACGAATTAATGCA
ATGGCATGTGAGGCAAAGGCCAATGCGAAAATTCCACAATCAACTAAATTGAAATGTATT
GGTTTGAGTTTGTCTGGCTGTGAACAAGAATCGACAAATGCAGCACTTGAAAGAGAAATA
CGTCATTCATATCCAAATCTTGCCGAAAATTATGTAGTGTGCAGTGACACTATGGGAAGT
ATTATGACAATTTCGAATCTCGGAGGATTGGTTGTTATTGCAGGTACTGGTAGTAATGCG
GTTTTAAGGAATCCAAATGGAGAAACATTTCAATGTGGTGGATGGGGTCACCAATTAGGT
GATGAAGGTGGAGCTTGGTTTATCTCACAAAAACTTGTAAAAACAGTATTTGATCATGAA
GATAATTTAGAAAAATGTACTTATGACATTACAACTGCATGGAAACTGATCAAAAATCAT
TTTAAAATTGACACACGTGTCGATATGCTTGAACATTGCTATGCAAAATTCAATAAATCC
TTTTATGCTAAGTTGTGTCAAAAAATGTCTGTAGCTGCACTTGATGGTGATGAATTATGT
AAGAGTATCTTTAATGAAGCTGGAAGACTTTTGGCTAAAATGATTGTCGCACTCTTGCCT
AAAATCTCTCCTGAGCTTGTTAAGACTGGCTACTTGAATGTAATTTGTGTTGGTTCAGTA
TGGATAAGTTGGAATCTTTTGAAAACAGGGTTTATCAAAGAGCTTGAAAAACACAACATT
CTGTTCGAGTTACGACTTTTAAGACTAAAAAGCAACATTTCAATGGCCATCGGTTCAGTC
TATATGGCAGCCGACTCTGTGAAATTTCCATTGCCAAGAGACTATGAAGAAAATTATGAA
ATTTTCTTCAATTTTAATGGCAATTGTGAGCATTTAAATTTAAATAACAATATTTTGTAA

>g1594.t6 Gene=g1594 Length=312
MIGIPEVAKRINAMACEAKANAKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNL
AENYVVCSDTMGSIMTISNLGGLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWF
ISQKLVKTVFDHEDNLEKCTYDITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQ
KMSVAALDGDELCKSIFNEAGRLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLL
KTGFIKELEKHNILFELRLLRLKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNG
NCEHLNLNNNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1594.t6 Gene3D G3DSA:3.30.420.40 - 2 277 0.00e+00
5 g1594.t6 Gene3D G3DSA:3.30.420.40 - 81 264 0.00e+00
2 g1594.t6 PANTHER PTHR12862 BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN 2 297 0.00e+00
1 g1594.t6 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 30 234 0.00e+00
4 g1594.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 73 3.17e-05
3 g1594.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 82 297 0.00e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0045127 N-acetylglucosamine kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values