General information for g1594.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetyl-D-glucosamine kinase.
Parent gene
- The parent gene g1594 is located on chr_3: 12054418..12055535 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1594 | g1594.t7 | isoform | g1594.t7 | 12054418 | 12055535 |
| chr_3 | g1594 | g1594.t7 | exon | g1594.t7.exon1 | 12054418 | 12055535 |
| chr_3 | g1594 | g1594.t7 | cds | g1594.t7.CDS1 | 12054438 | 12055337 |
| chr_3 | g1594 | g1594.t7 | TTS | g1594.t7 | 12055514 | 12055514 |
| chr_3 | g1594 | g1594.t7 | TSS | g1594.t7 | NA | NA |
Sequences
>g1594.t7 Gene=g1594 Length=1118
TTGCAAAACGAATTAATGCAATGGCATGTGAGGCAAAGGCCAATGCGAAAATTCCACAAT
CAACTAAATTGAAATGTATTGGTTTGAGTTTGTCTGGCTGTGAACAAGAATCGACAAATG
CAGCACTTGAAAGAGAAATACGTCATTCATATCCAAATCTTGCCGAAAATTATGTAGTGT
GCAGTGACACTATGGGAAGTATTATGACAATTTCGAATCTCGGAGGATTGGTTGTTATTG
CAGGTACTGGTAGTAATGCGGTTTTAAGGAATCCAAATGGAGAAACATTTCAATGTGGTG
GATGGGGTCACCAATTAGGTGATGAAGGTGGAGCTTGGTTTATCTCACAAAAACTTGTAA
AAACAGTATTTGATCATGAAGATAATTTAGAAAAATGTACTTATGACATTACAACTGCAT
GGAAACTGATCAAAAATCATTTTAAAATTGACACACGTGTCGATATGCTTGAACATTGCT
ATGCAAAATTCAATAAATCCTTTTATGCTAAGTTGTGTCAAAAAATGTCTGTAGCTGCAC
TTGATGGTGATGAATTATGTAAGAGTATCTTTAATGAAGCTGGAAGACTTTTGGCTAAAA
TGATTGTCGCACTCTTGCCTAAAATCTCTCCTGAGCTTGTTAAGACTGGCTACTTGAATG
TAATTTGTGTTGGTTCAGTATGGATAAGTTGGAATCTTTTGAAAACAGGGTTTATCAAAG
AGCTTGAAAAACACAACATTCTGTTCGAGTTACGACTTTTAAGACTAAAAAGCAACATTT
CAATGGCCATCGGTTCAGTCTATATGGCAGCCGACTCTGTGAAATTTCCATTGCCAAGAG
ACTATGAAGAAAATTATGAAATTTTCTTCAATTTTAATGGCAATTGTGAGCATTTAAATT
TAAATAACAATATTTTGTAATTTCTATAACTATTTTAAGGACTAATCAAATTATTTGCTA
CTTAATGTCTTTAATTATAATTTTAGCTTTTTCGATCCAATCAATCACGAATTTTATTGT
TTTATTATCAAATATCTCTTTTTTATCATATTGTGTGTAATAATAAATTAAAAGCTATGA
AATAACACATGCAACTAAAAATATTTTAGTCTGTGTTT
>g1594.t7 Gene=g1594 Length=299
MACEAKANAKIPQSTKLKCIGLSLSGCEQESTNAALEREIRHSYPNLAENYVVCSDTMGS
IMTISNLGGLVVIAGTGSNAVLRNPNGETFQCGGWGHQLGDEGGAWFISQKLVKTVFDHE
DNLEKCTYDITTAWKLIKNHFKIDTRVDMLEHCYAKFNKSFYAKLCQKMSVAALDGDELC
KSIFNEAGRLLAKMIVALLPKISPELVKTGYLNVICVGSVWISWNLLKTGFIKELEKHNI
LFELRLLRLKSNISMAIGSVYMAADSVKFPLPRDYEENYEIFFNFNGNCEHLNLNNNIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1594.t7 | Gene3D | G3DSA:3.30.420.40 | - | 3 | 264 | 0 |
| 5 | g1594.t7 | Gene3D | G3DSA:3.30.420.40 | - | 68 | 251 | 0 |
| 2 | g1594.t7 | PANTHER | PTHR12862 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN | 4 | 284 | 0 |
| 1 | g1594.t7 | Pfam | PF01869 | BadF/BadG/BcrA/BcrD ATPase family | 25 | 221 | 0 |
| 3 | g1594.t7 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 69 | 284 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0045127 | N-acetylglucosamine kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
