General information for g16019.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16019 is located on chr_4: 7840193..7840657 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16019 | g16019.t1 | isoform | g16019.t1 | 7840193 | 7840657 |
| chr_4 | g16019 | g16019.t1 | exon | g16019.t1.exon1 | 7840193 | 7840657 |
| chr_4 | g16019 | g16019.t1 | cds | g16019.t1.CDS1 | 7840193 | 7840657 |
| chr_4 | g16019 | g16019.t1 | TSS | g16019.t1 | NA | NA |
| chr_4 | g16019 | g16019.t1 | TTS | g16019.t1 | NA | NA |
Sequences
>g16019.t1 Gene=g16019 Length=465
ATGAAGCAACAAAATAAATCAGTGATGAGTGAAATTCGTAAAATAAGAGAGGACAATGAT
TATTTTAATGAAGAAATCAATGAAAGAATTGAACAACTTCAAATGAAAAAAATTCACAAG
CTTGAAAAAGAAAATTTTAAATTCAAAGAACAATTGAGTGCCATGAAAAGTGTTCCAGAT
TTGAAAATAATAAATGGAAAAGATTCTTACAATGTTCATAAAGAATTATTTAAAAATCGA
AGTCGAGTCATTGCTGATTTGCTTAATTCAAAAAATGAATTGGATATAACTGATCTTCAC
ATTGAGGATTCTGGCTTAAAAATTGTCATTCATTACGTCTATACAGGATCAATTCCCAAA
AATGTACACATAAAAGAATTTGAAAATGTTGCAAATCTTCTTCAAATTGAGTTTTCTTTT
CAAGAACTTCGTGATTTACAAAATGGATATCATTATTATTACTAA
>g16019.t1 Gene=g16019 Length=154
MKQQNKSVMSEIRKIREDNDYFNEEINERIEQLQMKKIHKLEKENFKFKEQLSAMKSVPD
LKIINGKDSYNVHKELFKNRSRVIADLLNSKNELDITDLHIEDSGLKIVIHYVYTGSIPK
NVHIKEFENVANLLQIEFSFQELRDLQNGYHYYY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16019.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 60 | 136 | 1.11333E-5 |
| 4 | g16019.t1 | Coils | Coil | Coil | 23 | 43 | - |
| 3 | g16019.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 26 | 148 | 1.6E-7 |
| 1 | g16019.t1 | Pfam | PF00651 | BTB/POZ domain | 53 | 140 | 8.7E-6 |
| 5 | g16019.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 59 | 122 | 9.868 |
| 2 | g16019.t1 | SUPERFAMILY | SSF54695 | POZ domain | 52 | 135 | 1.96E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed