General information for g16020.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16020 is located on chr_4: 7841323..7842627 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16020 | g16020.t1 | isoform | g16020.t1 | 7841323 | 7842627 |
| chr_4 | g16020 | g16020.t1 | exon | g16020.t1.exon1 | 7841323 | 7842627 |
| chr_4 | g16020 | g16020.t1 | cds | g16020.t1.CDS1 | 7841323 | 7842627 |
| chr_4 | g16020 | g16020.t1 | TTS | g16020.t1 | 7843039 | 7843039 |
| chr_4 | g16020 | g16020.t1 | TSS | g16020.t1 | NA | NA |
Sequences
>g16020.t1 Gene=g16020 Length=1305
ATGGCAAATATCGAATGTGAATTTAGATATGTTCGAGATAAAGATGATAACAAAGAACTT
CTTTATGAATGTTTTTTTGATAATCAAAAAATTCCTTTTGGAAACTTTGTTTTTGAACGA
CAACATTTAGAAGGAATGACTGACAAAGATGTGACTAGTGTTGAATTTACTAATTGTGAT
TTTGACGCGTTTCCAAAACATTTTCAAAAATTATTTCCCAAAGTTACTCATCTTTGCATT
AGAAATTCAAACCTTGGAAACATCAGTCGAAAACATATAACACTATGGAGAAAAATGATT
TACATTTCCATCGAAAACTGTAAATTGAAACACTTAAAAGGAAATCTTTTCAGAGATTTG
GTTGACCTTGAATATATTTCATTTGCATACAATGAAATTGAGGACATTGATCCAGATATT
TTCAAAGGGTTATTATTCTTAAACTTTGTAGATTTAAGAAGAAATAAGAACTTTAACTTA
TGCTTTGATGAAGACGATGATGATAAAGATGCTTGTACTATGGACAAATTGACACGAGAA
ATTTTCTCTCTTCACCAAAGAAAACAAATTCAGTTGCAGGAAAATAAAATCAAAGAACTT
GAACAAAAACTTCAATTTCAAGAAAACTTCAAAGAATTACTCGAGCAACAAGGGAGAAAC
TTAATGGCTGAAATGGAGAAAAAAAATTTAGAACAAAATGAGAAAATAAAAACACTGGAG
GAACAAATTCAGTTGCAAGTTTTGAAAATTTCCAAACTTGAAAAGGACAATTGGAGACTA
ACAAAGCAACTGGATGTGATTATGGCTGAACCGACATTAAAAGATTTTACTATACAAATT
GAGGATAGAATTTTTAATGTTCATAAGACTCTTTTTGCATCTCAAAGTCCAGTTATTGCT
GAAATGCTAAAAAATAATCCAGATGTTCAGGAATTAAAACTTAAAGATTTAAAAGTTCCA
ATTTTTGAAGTAATTTATGAATTTATTATTCATGGTAAATTGCCTGGAATTGAAGCTGAT
CATCTTGAAAACTATGCAGCTGCAAATCGTTTGAAAATTGATGAACTGTCAAAAATATCT
GAAAAATATTTGTTAGATAAAATCAATGAAAACAATACGTTAGAGATCTTGGTTTTAAGC
AACAAGTTCAAAAATGATGCTCTTGAACAAAAATCTTTTAAAATCATTCAAAGTAAATTT
TTTCCTGAACGAAAATTAAACAATGAATTGGCAAAACAACCAGAGAAGTTGAAAAAGTTG
ATTGAAGCAAAAATGATTTTGGAAAAAGAATTTAGAGAACCTTAA
>g16020.t1 Gene=g16020 Length=434
MANIECEFRYVRDKDDNKELLYECFFDNQKIPFGNFVFERQHLEGMTDKDVTSVEFTNCD
FDAFPKHFQKLFPKVTHLCIRNSNLGNISRKHITLWRKMIYISIENCKLKHLKGNLFRDL
VDLEYISFAYNEIEDIDPDIFKGLLFLNFVDLRRNKNFNLCFDEDDDDKDACTMDKLTRE
IFSLHQRKQIQLQENKIKELEQKLQFQENFKELLEQQGRNLMAEMEKKNLEQNEKIKTLE
EQIQLQVLKISKLEKDNWRLTKQLDVIMAEPTLKDFTIQIEDRIFNVHKTLFASQSPVIA
EMLKNNPDVQELKLKDLKVPIFEVIYEFIIHGKLPGIEADHLENYAAANRLKIDELSKIS
EKYLLDKINENNTLEILVLSNKFKNDALEQKSFKIIQSKFFPERKLNNELAKQPEKLKKL
IEAKMILEKEFREP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16020.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 275 | 351 | 7.45276E-12 |
| 9 | g16020.t1 | Coils | Coil | Coil | 183 | 256 | - |
| 7 | g16020.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 259 | 4.4E-16 |
| 8 | g16020.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 260 | 402 | 5.7E-23 |
| 3 | g16020.t1 | PANTHER | PTHR26379:SF309 | OS02G0311150 PROTEIN | 184 | 400 | 1.2E-12 |
| 4 | g16020.t1 | PANTHER | PTHR26379 | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 184 | 400 | 1.2E-12 |
| 1 | g16020.t1 | Pfam | PF13855 | Leucine rich repeat | 102 | 156 | 7.8E-7 |
| 2 | g16020.t1 | Pfam | PF00651 | BTB/POZ domain | 268 | 366 | 4.1E-12 |
| 12 | g16020.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 274 | 338 | 11.875 |
| 11 | g16020.t1 | SMART | SM00225 | BTB_4 | 274 | 368 | 3.2E-6 |
| 5 | g16020.t1 | SUPERFAMILY | SSF52058 | L domain-like | 52 | 159 | 2.41E-14 |
| 6 | g16020.t1 | SUPERFAMILY | SSF54695 | POZ domain | 258 | 367 | 3.51E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
