General information for g16032.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g16032 is located on chr_4: 7886296..7889180 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16032 | g16032.t2 | isoform | g16032.t2 | 7882609 | 7883815 |
| chr_4 | g16032 | g16032.t2 | exon | g16032.t2.exon1 | 7882609 | 7883815 |
| chr_4 | g16032 | g16032.t2 | cds | g16032.t2.CDS1 | 7882814 | 7883815 |
| chr_4 | g16032 | g16032.t2 | TSS | g16032.t2 | NA | NA |
| chr_4 | g16032 | g16032.t2 | TTS | g16032.t2 | NA | NA |
Sequences
>g16032.t2 Gene=g16032 Length=1207
TGAAATTTTTGTTCTACTTCAATATTTAAAAATTAAAGTAAATTTGCCATCAAATATTAT
TAAAATTACTAATGATGATTTTTCATGGTTGGATAAATTGAAAAGTATTGCAAAATCAGA
ACCTACAATTGTTTATGCTGAAAATGAAGAAATCTCAGGAATTATTGGTCTTGTAAATTG
TATAAGAAAGGAACCTGGTTGCCAAATGGTTCGTTGTTTCTTTATTGATGATTGCAATGC
ACCACCATTTAATATTGATGATGAATTTTATAAAACTCAAATTAATAAAAATCTTGCAAT
GAATGTATTCCGTGATCGACAATGGGGAAGTTATAAGCATTTGCTACTTGATCCAATTTA
TGAAAAAATTCCTCAAAATGGAGCTTGCTATGCCAATGTTTTAACCCGTGGTGATTTATC
ATCTTTCAAATGGTTTCAAAGTCATTTAACTGATTTATCACATAAAAATGTCGTCAAAGT
TCATTGTTCATCATTAAATTTTCGTGATGTGATGTTAGCAACTGGAAAATTATCAGCAGA
TATTTTTGGTAACAATCGACTTGATCAAATGTATCTTTTTGGTTTAGAATTTTCTGGTAT
TACCAATAATGGTCGAAGAGTTATGGGATTAAGAAATTGTAATGCACATGCAACACATAT
TTTAGCAGATAAAGAGCTGTTATGGGATGTTCCTGATAATTGGACATTAGAAGAAGCTGC
AACAGTTCCATGTGTTTATGCAACTGTTTATGCGTCATTTTTTATTGCAACAAAAATCAA
AAGTGGCAAATCTATTTTAATTCATTCAGGAACTGGCGGTGTTGGCTTAGCTGCAATTCA
AGTGGCACTTGCATATGGACTTGAAGTTTTTACAACTGTCAGTACAGAAGAAAAAAAGAA
ATTTTTACTTGAAAAATTTCCACAATTGAACTATTTGAATATTGGTAATTCTCGAGATAC
ATCATTTGAAGATTTAATAATGGAAAGAACATGCGGCAAAGGAGTTGATTATGTATTGAA
TTCATTGGCTGAAGAGAAATTGCTAGCATCATTGAGATGTTTGTCAAAAGGTGGAACATT
TTTTGAAATTGGCAAATTTGATATATCGAATGATAATAAGCTCGGCCTAGGAGAATTTAT
TAAAGAAATTTCATTCCATACAATTTTTATCGATAATTATTTTGAAGCTTCATCAGATAA
AAAAAAG
>g16032.t2 Gene=g16032 Length=334
MVRCFFIDDCNAPPFNIDDEFYKTQINKNLAMNVFRDRQWGSYKHLLLDPIYEKIPQNGA
CYANVLTRGDLSSFKWFQSHLTDLSHKNVVKVHCSSLNFRDVMLATGKLSADIFGNNRLD
QMYLFGLEFSGITNNGRRVMGLRNCNAHATHILADKELLWDVPDNWTLEEAATVPCVYAT
VYASFFIATKIKSGKSILIHSGTGGVGLAAIQVALAYGLEVFTTVSTEEKKKFLLEKFPQ
LNYLNIGNSRDTSFEDLIMERTCGKGVDYVLNSLAEEKLLASLRCLSKGGTFFEIGKFDI
SNDNKLGLGEFIKEISFHTIFIDNYFEASSDKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16032.t2 | CDD | cd05195 | enoyl_red | 90 | 328 | 0 |
| 7 | g16032.t2 | Gene3D | G3DSA:3.90.180.10 | - | 53 | 334 | 0 |
| 2 | g16032.t2 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 1 | 333 | 0 |
| 3 | g16032.t2 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 1 | 333 | 0 |
| 1 | g16032.t2 | Pfam | PF00107 | Zinc-binding dehydrogenase | 205 | 324 | 0 |
| 6 | g16032.t2 | SMART | SM00829 | PKS_ER_names_mod | 69 | 332 | 0 |
| 5 | g16032.t2 | SUPERFAMILY | SSF50129 | GroES-like | 87 | 200 | 0 |
| 4 | g16032.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 165 | 326 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
