General information for g1607.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1607 is located on chr_3: 12101069..12102151 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1607 | g1607.t4 | TTS | g1607.t4 | 12098272 | 12098272 |
| chr_3 | g1607 | g1607.t4 | isoform | g1607.t4 | 12098458 | 12100033 |
| chr_3 | g1607 | g1607.t4 | exon | g1607.t4.exon1 | 12098458 | 12099276 |
| chr_3 | g1607 | g1607.t4 | exon | g1607.t4.exon2 | 12099507 | 12099571 |
| chr_3 | g1607 | g1607.t4 | cds | g1607.t4.CDS1 | 12099549 | 12099571 |
| chr_3 | g1607 | g1607.t4 | exon | g1607.t4.exon3 | 12099626 | 12100033 |
| chr_3 | g1607 | g1607.t4 | cds | g1607.t4.CDS2 | 12099626 | 12100004 |
| chr_3 | g1607 | g1607.t4 | TSS | g1607.t4 | NA | NA |
Sequences
>g1607.t4 Gene=g1607 Length=1292
TGCAAAAGACACACACAATTAAGAACAAGATGCTTGACGTGAAAAAAGCAATTAGTAAGC
ACGATATGGATCGCTTTAGGAATGACCAACGTGGGATGATGGGAAATAATTATAGTGGAG
GTAATTATGGATCGGGCTATGGCAGAAATCAAGGAAGCTGGGGAGGACGAAATAATAATG
GAAATTGGGGGCAATGGTCAAATGATTCTTATGGAGGAAATTCAGGTTGGAGTAACGATA
ATGGACCATGGGATAGTCAAAGTAGTTGGTCCAATAATAATGGCGGATACAATCAAAATT
GGTCAAATGATAGTTTCGGTAATAATTATCAACAAAGCTATAATAACGGTGGCGGACCAG
TTCGAGGTAGAAGCAGTTATGGCAATCGTTCAGCACCATACAACCAAAGAAGTGGAAATC
GACGCTACTAAGAAAATAACATACATTTTAGTATGAAAAACTTGTGTGTCATGGTTTCAA
TATGCAAAAGTATAAAGATTTATTCATAAGACAAAACAAAATTGTAAATGTTTTTCCTTC
AAATTTAAACTTCTACTATACAAGAGACATAATCATGTGAGAAGCATAGAGTTTTTAGTT
ATTGGGCCTTCCACTTCAAGAAAAATAAATCCAACGACAAATTCATACAGAGAGAGATTG
AGAGAAAGAGATAAGCCGATATATATGTTAGACAGAAACCAAAAATGAAGGCGCGTGAGA
ATAGAAATTACACAAGTGAGATATCAAGACAGAAAAAGAAAGATCTTCAAGATGAAATGC
AATTGCATTTTCCTTCTCAATAAGAATAATAGTTGTGTAGGAAGAAGAAATTGCGTGATG
ACAGGAGAGATAAGTTTTTTTTCTTTAGTTTTGAAGTTTCTCCAGAAGACGATGATAATC
AACATTTTATTTGTTCAGTTTTTTATATAATTCATTTTTCACAATTTACGTGCTATTTTA
TAATTTATACATATATAAAATAATATCTATTGGATAGAATGTAAGCATACTTTTAATTAC
AAAACGCTGATGAGAATTAGTTGTTAAAAAAAGATTGAAATATGTGTTTTTTTTTCATGA
TAAAATGATGATGAGAAATGAAAAATAGTAATCAATACATGCACATAAATAAATGTCTCA
TTTTTTTGAATTAAGTATTCACATTATAATTTCCTGTGCATAATAATGTACATTACAATT
TATAATATTTCCTTTGATTAAACTGAATTTTAATTCAGAATTTCAGAGGCAATTTGATGT
AGACATTAAGAATGAAAGAAAAAAGTTACAGA
>g1607.t4 Gene=g1607 Length=133
MLDVKKAISKHDMDRFRNDQRGMMGNNYSGGNYGSGYGRNQGSWGGRNNNGNWGQWSNDS
YGGNSGWSNDNGPWDSQSSWSNNNGGYNQNWSNDSFGNNYQQSYNNGGGPVRGRSSYGNR
SAPYNQRSGNRRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g1607.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - |
| 3 | g1607.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 2 | g1607.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 133 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
