General information for g16070.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine/threonine-protein kinase par-1.
Parent gene
- The parent gene g16070 is located on chr_4: 7977618..7989245 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16070 | g16070.t3 | TTS | g16070.t3 | 7972930 | 7972930 |
| chr_4 | g16070 | g16070.t3 | isoform | g16070.t3 | 7973883 | 7975347 |
| chr_4 | g16070 | g16070.t3 | exon | g16070.t3.exon1 | 7973883 | 7974959 |
| chr_4 | g16070 | g16070.t3 | cds | g16070.t3.CDS1 | 7974901 | 7974959 |
| chr_4 | g16070 | g16070.t3 | exon | g16070.t3.exon2 | 7975019 | 7975137 |
| chr_4 | g16070 | g16070.t3 | cds | g16070.t3.CDS2 | 7975019 | 7975137 |
| chr_4 | g16070 | g16070.t3 | exon | g16070.t3.exon3 | 7975198 | 7975347 |
| chr_4 | g16070 | g16070.t3 | cds | g16070.t3.CDS3 | 7975198 | 7975292 |
| chr_4 | g16070 | g16070.t3 | TSS | g16070.t3 | NA | NA |
Sequences
>g16070.t3 Gene=g16070 Length=1346
CGGTTCCAATGCTGAAGAGCAGGTAAAGCCACGTGCCCTAAGATTTACATGGTCTATGAA
AACAACCTCACCAAGACTGCCTGATGATATCATGGCTGAGATTAGATCTGTTTTAGATAA
AAATAATTGCGATTATGAACAAAGAGAAAGATTTGTTCTTTTGTGTGTCCATGGTGATCC
AAATACTGATTCATTAGTACAGTGGGAGATTGAAGTCTGCAAACTGCCTCGTCTGTCATT
AAATGGTGTTCGATTTAAGAGAATTTCAGGCACAAGCATTGGATTCAAGAATATTGCTAG
TAAGATAGCATACGACCTACGTCTGTGACTCAATCGTCATCCTTCAGCTACCACCGCATC
AACGACAGATAAAAACGTCACTACAAATAATAACAACAACATTCCAACGACAATTCATGA
CAAATTAGTCGATGAAAGTGATGAATGGAGTTTTGATAGTGGCGAAGATGTTATCGAGAT
CTCACTTAATGAATCTGCAAGTGCAAAAAGCGGTGGAGGTGGTGGCAAGAAGTGAAATTT
AAATCTAATTAAGACAATTAAAAAGAAATTTACGAAATAGAAATGAATTCTCACCGTGTA
AAAGTGACAAAATGATTTAAAATATGGTGAAAGTAAAAGTGGTCAGTTTTGATACTTGAA
CCCTTTTGATGATAAAAAAAAATGTTGAAAAAGTCCCAAAATTACGACGCTGTTAAATTA
TGAAGTATAAAAAATTATTAAAAATCCTTAGGAATTTGCTAAAGAAAAAATGAAATAAAA
TTGAAGAAATTTTTGTATAAATTTAGAAAATTTCTTAAAATTTATTTCAACAGACTAAAA
AATTATTATTATTACATTATTAAACATCATTATAATTGTTATAATTGTAAATAAAAATTA
ATTGAAAAAAAGATTCTGAAAAATAATTTAATAAGTAAAAAAATGAAAAAAATTATTATT
ATTATCGTATTTGCTATTATTGAGAGATAAAAAAAGTGTAGTGAAAATTTTCAGTATGAA
AGAGAAATTTTTTAGCAAATTTACAGAAAAAATTTTTTTTTTAAAAAAGTTTCTTATTTT
TTCAATTTTTCAAAAAATTTGAAAAATTTTACAAAATTTTAAAAATATAAAATTTTTTTT
TGTGAGCTCTATAAATTTAAAAATAAAAACAGGAACAAAAGCAAGTTCAAAAAATGTTAG
AATTTGAAAAAAATTCCAAGAAATTTTTATTTATTTTCAAAATTTCATTCTTAAAAGAAA
ACAAATTAGCTTTCTTCAAAAATTTATTAAAATTTCCCAAATAAAAATTCTTTTTTCATA
CTGAAAAATAAAAACATAAAACAAAA
>g16070.t3 Gene=g16070 Length=90
MKTTSPRLPDDIMAEIRSVLDKNNCDYEQRERFVLLCVHGDPNTDSLVQWEIEVCKLPRL
SLNGVRFKRISGTSIGFKNIASKIAYDLRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g16070.t3 | Gene3D | G3DSA:3.30.310.80 | Kinase associated domain 1 | 1 | 90 | 0.000 |
| 1 | g16070.t3 | Pfam | PF02149 | Kinase associated domain 1 | 48 | 90 | 0.000 |
| 4 | g16070.t3 | ProSiteProfiles | PS50032 | Kinase associated domain 1 (KA1) profile. | 41 | 90 | 18.366 |
| 2 | g16070.t3 | SUPERFAMILY | SSF103243 | KA1-like | 1 | 90 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
