General information for g16075.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16075 is located on chr_4: 8029883..8037387 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16075 | g16075.t2 | isoform | g16075.t2 | 8029883 | 8037387 |
| chr_4 | g16075 | g16075.t2 | exon | g16075.t2.exon1 | 8029883 | 8029968 |
| chr_4 | g16075 | g16075.t2 | cds | g16075.t2.CDS1 | 8029883 | 8029968 |
| chr_4 | g16075 | g16075.t2 | exon | g16075.t2.exon2 | 8030032 | 8030388 |
| chr_4 | g16075 | g16075.t2 | cds | g16075.t2.CDS2 | 8030032 | 8030388 |
| chr_4 | g16075 | g16075.t2 | exon | g16075.t2.exon3 | 8030696 | 8031259 |
| chr_4 | g16075 | g16075.t2 | cds | g16075.t2.CDS3 | 8030696 | 8031259 |
| chr_4 | g16075 | g16075.t2 | exon | g16075.t2.exon4 | 8031353 | 8031988 |
| chr_4 | g16075 | g16075.t2 | cds | g16075.t2.CDS4 | 8031353 | 8031988 |
| chr_4 | g16075 | g16075.t2 | exon | g16075.t2.exon5 | 8037213 | 8037387 |
| chr_4 | g16075 | g16075.t2 | cds | g16075.t2.CDS5 | 8037213 | 8037387 |
| chr_4 | g16075 | g16075.t2 | TSS | g16075.t2 | NA | NA |
| chr_4 | g16075 | g16075.t2 | TTS | g16075.t2 | NA | NA |
Sequences
>g16075.t2 Gene=g16075 Length=1818
ATGAGATTTGAAATTGAAAACTTTTTTGATTTGTCAACAATTCATGGTTTAAAATATTTA
TCAAAAAAATTTCATTGGATTGAAAGATTTTTTTGGTCACTTTCACTCTTTATTTCGATT
ATTCTTACAATATATTTGATCACTGAATTATTTATAAATTTAAATCATGATCCTGTAATC
ACGCACATTGCAGATCATCAAGTTCCAATCACTGATATTGATTTCCCAGCTATTACTGTT
TGTTTAGGACAAGAGCATGTTATTCCATATTATTATGAAAAATTCAAATATTATAAAAGA
CTTTCACATATTAAATATTCAGACAAAAAAATTTTTAAAGATTTTGCAGATGAAATTAAA
TATTTTAAATATATGAATTATGCAGCGATTTTAGATGAAATTGCTAAAGGTTATTTTGAT
GTTGATAAATTGGGACTAAAAATTCTCAAACGACTTCAAGTTATTGACATATTGACAAAG
CGAGGAATTTTAAGTCAATTAAATATTTCAATTCCAACAGATGATTTTCTTGATGTTCTT
TCTGAATTTCAAAGAGCAAATATTCGTGAAATTTTACCACTTTTTCATTGGAGTCGAGAT
TTTCATGCAAGATATTCAATAATTTTAACAGAATTTGGTTTATGCAGAAGTTTTAATCTT
GCATTGCCAGAGGATATTTTTTATATAGATTCAATTTCTGATGATTTTCTTCATAATTAT
TTTACTGATTCTGATTATAATGGACAGAAAAATAATACAGAAATTATTCCAAGAAAAGCA
GAAAATTCTGATGATTCGGTAAATTTTTGGACAGGAGGAAAACCAAGAGAGACAGAAGTT
TTTAAATTTGAAGGTTATATGATATTTTATCATGATCCATATGAGATGCCGAAAAAAAAT
ACAAAAGCAGTCATAATTAATGTTCAAGAAACTCACATAATGAATTTATTTTTTACACCA
GAAATGGTTGACATTGATCAGTCGCTGTATGATGTTGATCCATTTGATCGCAATTGTTAT
TTTGATGATGAACGAAAATTAAATTTATTCAAAGTCTACACAAAAGCAAATTGCGAATCA
GAATGCTTAACAAATTTCATGATCAGAAAATGTGATTGTGCTGAATTTTTCATGATTCGA
AATTGTACAACTCGCATTTGTTCTGCTATTGACAAAAATTGCATTGATAAAGCAAATAGA
AATTTCGAAAGACAGAAAAGCCAATGCAAATGTTTGCCACAATGTACTTATGTGAAATTC
GATGTGAAACGTGTTGATGGCAGTGGTGGAATAAAAGAACAATATAACATCAATAATGAA
CAAAAATCAGCTAATATTTTCATAAAATTTTTAAAAAGTTCATTCCCAAGATTTGTTCGA
AAACAAAATTTTGATTTTGTTCAATTTTTGTCATTTGTTGGTGGTCTTTTGGGTTTATTT
GCTGGATTTTCAATGATTTCAGCTGTTGAAATTTTTTATTGGTTTTTTGTTAGGATTTTT
ACAAAGAAATTTTTTCAAAGATCAACAAAAGTTCATCCATTTAATGAAAAAATAGAAAAG
AAATCAAATATTTTTAAGGAATATTTTGGAAACTCATCAATTCATGGTTTAAATTATGGA
ATAAATACAAATTTGATTGAAAATCTCAAAAGACTCCAAGTTATTGACATATTAACAAAG
CGAGGAATTTTAAGTCAATTTAATATTTCAATTCCAACAGATGATTTTCTTGATGTTCTT
GCTGAATTTCAAAGAGCACATATTCGTGAAATTTTACCACTTTTTCATTGGAGTCGAGAT
TATCATGCAAGATATTAA
>g16075.t2 Gene=g16075 Length=605
MRFEIENFFDLSTIHGLKYLSKKFHWIERFFWSLSLFISIILTIYLITELFINLNHDPVI
THIADHQVPITDIDFPAITVCLGQEHVIPYYYEKFKYYKRLSHIKYSDKKIFKDFADEIK
YFKYMNYAAILDEIAKGYFDVDKLGLKILKRLQVIDILTKRGILSQLNISIPTDDFLDVL
SEFQRANIREILPLFHWSRDFHARYSIILTEFGLCRSFNLALPEDIFYIDSISDDFLHNY
FTDSDYNGQKNNTEIIPRKAENSDDSVNFWTGGKPRETEVFKFEGYMIFYHDPYEMPKKN
TKAVIINVQETHIMNLFFTPEMVDIDQSLYDVDPFDRNCYFDDERKLNLFKVYTKANCES
ECLTNFMIRKCDCAEFFMIRNCTTRICSAIDKNCIDKANRNFERQKSQCKCLPQCTYVKF
DVKRVDGSGGIKEQYNINNEQKSANIFIKFLKSSFPRFVRKQNFDFVQFLSFVGGLLGLF
AGFSMISAVEIFYWFFVRIFTKKFFQRSTKVHPFNEKIEKKSNIFKEYFGNSSIHGLNYG
INTNLIENLKRLQVIDILTKRGILSQFNISIPTDDFLDVLAEFQRAHIREILPLFHWSRD
YHARY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g16075.t2 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 4 | 81 | 1.4E-48 |
| 4 | g16075.t2 | PANTHER | PTHR11690:SF243 | PICKPOCKET 12-RELATED | 4 | 81 | 1.4E-48 |
| 3 | g16075.t2 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 285 | 512 | 1.4E-48 |
| 5 | g16075.t2 | PANTHER | PTHR11690:SF243 | PICKPOCKET 12-RELATED | 285 | 512 | 1.4E-48 |
| 1 | g16075.t2 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 8 | 493 | 5.4E-62 |
| 8 | g16075.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 29 | - |
| 12 | g16075.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 52 | - |
| 10 | g16075.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 53 | 468 | - |
| 11 | g16075.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 469 | 497 | - |
| 9 | g16075.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 498 | 605 | - |
| 7 | g16075.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 52 | - |
| 6 | g16075.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 475 | 497 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed