General information for g16076.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16076 is located on chr_4: 8037649..8040250 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16076 | g16076.t1 | isoform | g16076.t1 | 8037649 | 8040250 |
| chr_4 | g16076 | g16076.t1 | exon | g16076.t1.exon1 | 8037649 | 8037773 |
| chr_4 | g16076 | g16076.t1 | cds | g16076.t1.CDS1 | 8037649 | 8037773 |
| chr_4 | g16076 | g16076.t1 | exon | g16076.t1.exon2 | 8038374 | 8038496 |
| chr_4 | g16076 | g16076.t1 | cds | g16076.t1.CDS2 | 8038374 | 8038496 |
| chr_4 | g16076 | g16076.t1 | exon | g16076.t1.exon3 | 8038550 | 8038664 |
| chr_4 | g16076 | g16076.t1 | cds | g16076.t1.CDS3 | 8038550 | 8038664 |
| chr_4 | g16076 | g16076.t1 | exon | g16076.t1.exon4 | 8038720 | 8038856 |
| chr_4 | g16076 | g16076.t1 | cds | g16076.t1.CDS4 | 8038720 | 8038856 |
| chr_4 | g16076 | g16076.t1 | exon | g16076.t1.exon5 | 8039443 | 8040250 |
| chr_4 | g16076 | g16076.t1 | cds | g16076.t1.CDS5 | 8039443 | 8040250 |
| chr_4 | g16076 | g16076.t1 | TSS | g16076.t1 | NA | NA |
| chr_4 | g16076 | g16076.t1 | TTS | g16076.t1 | NA | NA |
Sequences
>g16076.t1 Gene=g16076 Length=1308
ATGAGATGCCGAAAAAAAATACAAAAAGTCATAATTAATGTTCAAGAAACTCACAATAAT
GATTTATTTTTTACACCAGAAATGGTTGACATTGATCAGTCGCTGTATGATGTTGATCCA
TTTGAACCAACAGAAGTTCATCCATTTAATGAAATTAAAGAAAGAAAATCAAATATTTTT
AAGGAATATTTCGGAAATTCATCAATTCATGGTTTAAATTATGGAACTAATACAAATTTG
ATTGAAAAGCTTTTCTGGACATTTTTTGTGACACTTTCAATTACTTTTTGCATCATTATG
GCTTTTGATATCAAAATACAAAAAAGAATTGTTCATGAAGACAACACTAATTTTAAAAGA
AAAATTCCATTTCCAGCAGTTACATTCATACCAAGTTATTTTATAGACAATGAATTTGAT
GTTAATTTTAAAGATGAAACGGATTATGAAAAATTTGTTAGAAGATTGGAGAACAAAAAA
TTTAAAGAAAAAATTCAAAATGTCAACGATGAATTTAAGCTTAAAAGAAATGTTTCAATG
TTGAATCAAAAATCAATGCCAAAAATGTCAAAAAATCAATATCCACTAAAAGTAGGAGTC
AATGATCGTTCAAAATTTCAATTACATATTGATGAATCAAAATTCAATCTGAAACAACTT
CAAAGATGTGTGCTTAGAATGATTGTAGTTCACTCAACTGATTATCTTGCAACATTTCTT
GATTTAAGGGAATTTATTGATATTGAAAAGTCAATGAATATCGAAATTGTTTCTGAATTT
ACAAAGACTGAAGAAAGTTTAAAATCACAAAGTCCAAAAGAACGTGAATGTTATTTTGAA
AATGAAAGAAAATTAAAATATTTTAAAATTTATTCACAAAAGCATTGTGAAATGGAATGT
TCAATGGATCGTTTATTTGAAGAACATAAATGTCAAATGGTTGATATAATTTACAAAGAA
AGACGAAATTTTTGTCTCGAAATCATGCATGATGAGAAACGAGGTATTTTGCAAAAAGAC
AATTGTTCATGTTTGCCATCGTGCAATTTGTTGACTTATCATGTAAAATATTTTCCAATA
GAAAGTGAAGGAAATGAATCAATCATAACAGTCACAATGAATGGTGAAGATTTCATTCTT
TATCGACGTTATCAACTTTTTACATTTTCTGATATTGTCTCATATGTTGGTGGTCTACTT
GGACTTTTTGCTGGCATTTCTGTGCTTTCGATTATTGAAATATTTTATTATTTCACTTTA
AGATTGGGAAATGACATTTTAAAATTTTATCACAGATTTAATGAATAG
>g16076.t1 Gene=g16076 Length=435
MRCRKKIQKVIINVQETHNNDLFFTPEMVDIDQSLYDVDPFEPTEVHPFNEIKERKSNIF
KEYFGNSSIHGLNYGTNTNLIEKLFWTFFVTLSITFCIIMAFDIKIQKRIVHEDNTNFKR
KIPFPAVTFIPSYFIDNEFDVNFKDETDYEKFVRRLENKKFKEKIQNVNDEFKLKRNVSM
LNQKSMPKMSKNQYPLKVGVNDRSKFQLHIDESKFNLKQLQRCVLRMIVVHSTDYLATFL
DLREFIDIEKSMNIEIVSEFTKTEESLKSQSPKERECYFENERKLKYFKIYSQKHCEMEC
SMDRLFEEHKCQMVDIIYKERRNFCLEIMHDEKRGILQKDNCSCLPSCNLLTYHVKYFPI
ESEGNESIITVTMNGEDFILYRRYQLFTFSDIVSYVGGLLGLFAGISVLSIIEIFYYFTL
RLGNDILKFYHRFNE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g16076.t1 | Gene3D | G3DSA:1.10.287.770 | - | 367 | 422 | 7.8E-7 |
| 3 | g16076.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 59 | 168 | 2.3E-27 |
| 5 | g16076.t1 | PANTHER | PTHR11690:SF240 | PICKPOCKET 18-RELATED | 59 | 168 | 2.3E-27 |
| 4 | g16076.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 206 | 423 | 2.3E-27 |
| 6 | g16076.t1 | PANTHER | PTHR11690:SF240 | PICKPOCKET 18-RELATED | 206 | 423 | 2.3E-27 |
| 2 | g16076.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 63 | 180 | 8.7E-9 |
| 1 | g16076.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 226 | 417 | 2.2E-26 |
| 12 | g16076.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 83 | - |
| 14 | g16076.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 102 | - |
| 10 | g16076.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 103 | 391 | - |
| 13 | g16076.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 392 | 418 | - |
| 11 | g16076.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 419 | 435 | - |
| 8 | g16076.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 102 | - |
| 7 | g16076.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 418 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed