General information for g16092.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 648.
Parent gene
- The parent gene g16092 is located on chr_4: 8127041..8130548 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16092 | g16092.t1 | TSS | g16092.t1 | 8124624 | 8124624 |
| chr_4 | g16092 | g16092.t1 | isoform | g16092.t1 | 8124906 | 8127041 |
| chr_4 | g16092 | g16092.t1 | exon | g16092.t1.exon1 | 8124906 | 8125052 |
| chr_4 | g16092 | g16092.t1 | cds | g16092.t1.CDS1 | 8124906 | 8125052 |
| chr_4 | g16092 | g16092.t1 | exon | g16092.t1.exon2 | 8125228 | 8125607 |
| chr_4 | g16092 | g16092.t1 | cds | g16092.t1.CDS2 | 8125228 | 8125607 |
| chr_4 | g16092 | g16092.t1 | exon | g16092.t1.exon3 | 8125668 | 8126022 |
| chr_4 | g16092 | g16092.t1 | cds | g16092.t1.CDS3 | 8125668 | 8126022 |
| chr_4 | g16092 | g16092.t1 | exon | g16092.t1.exon4 | 8126422 | 8126709 |
| chr_4 | g16092 | g16092.t1 | cds | g16092.t1.CDS4 | 8126422 | 8126709 |
| chr_4 | g16092 | g16092.t1 | exon | g16092.t1.exon5 | 8126763 | 8127041 |
| chr_4 | g16092 | g16092.t1 | cds | g16092.t1.CDS5 | 8126763 | 8127041 |
| chr_4 | g16092 | g16092.t1 | TTS | g16092.t1 | NA | NA |
Sequences
>g16092.t1 Gene=g16092 Length=1449
ATGGAAGGACTAAAAGTGAATGAATTAAATTTCGACAATCACATCAACAAGTGTCGAATT
TGTTTCAAATCATTCAGCATTGAAGAACATCAAATTGAAATAACTAAAGCAATTGAAAAG
AAATTCAATGAAATTACACAAATTAATCTTAAACTCACAAAAGAAACGTCCAAGAAAATT
TGTGTAATTTGTAGTTATCAATTGTCAACAATTTCACAAGCAAAAAAGAATATGATTTTA
GCTCAAAAAGCTCTTCAAAATCACCTAAAAAAATCAAAACCTAAACAGATTTCAACTAAA
TCACAAGAATTAAATTTCTTAGAACTTGATAAAACTGAAATAATTTTAAAACAAGACGAT
GAAATTATTGAAGAACATTTAATTGATGATGAACAATTTGTAAGTGGAATTGCTGAAGAA
ATTATTATTAAAGAAGAAGAAACGAGCAAAAATGAAGAAAATTTTGAAATTGAAAGAAAA
TTTTATGAATTAGAGGAAGAGAAAAATTTAAACTCTTTTGAAAAAAGTAATGAAGCTTCC
ACAAATCTTCATCCCAACAAATTCACATGCCATGATTGTGGAAAATCATTTTCTTGCGGA
GGAAGTCTTTCAAATCACATTTCAATTTATCATAAAATTTCAGTTATTGAACTTCCTTGT
TCTGTATTTAATTGTGTAAAGAAATTCAAAACCAAAAAGCAACTGACTCAACATTTAAAA
ACACACAACGTAGAGAAGCAAGTATGTCCAGAGTGCGGACTATTAGTTGGAAATAAACAC
AATTTAACAAAACATATTAAAAGAATGCATTTGAAAATGTACAGCTTCTTCTGTGATTTA
TGCGATTTTAAAGGATTTTTTAAATTTAGTATCGATCAACATATGAAAAAACATTTAGAC
AAAAGCGAACGTGAAAGATTTTACTGTGATGAATGCAATTTTGAGTCAATATCAAAAATG
TCATTGCGAACTCATAAAAGAATGGAGCATTTGGGTCAAAAGAAAACTTACATTTGTCAT
TGTGGGAAAAGTTTTACTCAGAGCAGTTCATATTACACACATGTTCGAGTTGTTCATCAG
AAAATTAAAAATCATTCTTGCACTTATGCTGATTGTAATAAAACATTTGCTGAAAAATCT
CAATTAAAAAATCATGTGAAATCACAACATTTAAAAACTCGAGACATTCCATGTACACAA
TGTGGTAAATTTTTTGCAACTCAGAAACATTTGACAGCTCATTTAAAATATCATCGACCG
CCTTCATATGTTTGTCAATATGGAAATTGTGGAAATGCTTTTTATACTTCTAGTCAACTT
ACAGCACATTATAAAGTACATAATAACCAAAGAGATCATGCATGTCATTTGTGTGATAAA
AGATATTTTCATAGATCACATTTAAAAAAGCATTTGAATGCACATTCAAATGTTAGTGTT
TTAAGATAA
>g16092.t1 Gene=g16092 Length=482
MEGLKVNELNFDNHINKCRICFKSFSIEEHQIEITKAIEKKFNEITQINLKLTKETSKKI
CVICSYQLSTISQAKKNMILAQKALQNHLKKSKPKQISTKSQELNFLELDKTEIILKQDD
EIIEEHLIDDEQFVSGIAEEIIIKEEETSKNEENFEIERKFYELEEEKNLNSFEKSNEAS
TNLHPNKFTCHDCGKSFSCGGSLSNHISIYHKISVIELPCSVFNCVKKFKTKKQLTQHLK
THNVEKQVCPECGLLVGNKHNLTKHIKRMHLKMYSFFCDLCDFKGFFKFSIDQHMKKHLD
KSERERFYCDECNFESISKMSLRTHKRMEHLGQKKTYICHCGKSFTQSSSYYTHVRVVHQ
KIKNHSCTYADCNKTFAEKSQLKNHVKSQHLKTRDIPCTQCGKFFATQKHLTAHLKYHRP
PSYVCQYGNCGNAFYTSSQLTAHYKVHNNQRDHACHLCDKRYFHRSHLKKHLNAHSNVSV
LR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 35 | g16092.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 162 | 246 | 1.3E-9 |
| 34 | g16092.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 247 | 304 | 4.0E-6 |
| 33 | g16092.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 305 | 367 | 4.2E-8 |
| 31 | g16092.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 368 | 418 | 1.1E-9 |
| 32 | g16092.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 420 | 480 | 1.4E-10 |
| 6 | g16092.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 43 | 387 | 1.1E-48 |
| 8 | g16092.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 43 | 387 | 1.1E-48 |
| 5 | g16092.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 289 | 477 | 1.1E-48 |
| 7 | g16092.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 289 | 477 | 1.1E-48 |
| 3 | g16092.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 219 | 242 | 0.011 |
| 2 | g16092.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 365 | 390 | 0.0031 |
| 4 | g16092.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 397 | 418 | 3.2E-4 |
| 1 | g16092.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 423 | 447 | 0.004 |
| 26 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 190 | 211 | - |
| 27 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 220 | 242 | - |
| 29 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 249 | 270 | - |
| 25 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 367 | 390 | - |
| 28 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 398 | 418 | - |
| 24 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 425 | 447 | - |
| 30 | g16092.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 455 | 475 | - |
| 36 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 188 | 211 | 10.679 |
| 38 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 218 | 247 | 11.344 |
| 40 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 307 | 335 | 10.138 |
| 41 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 337 | 364 | 9.598 |
| 37 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 365 | 395 | 11.302 |
| 39 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 396 | 418 | 10.783 |
| 43 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 423 | 452 | 13.069 |
| 42 | g16092.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 453 | 477 | 9.951 |
| 15 | g16092.t1 | SMART | SM00355 | c2h2final6 | 188 | 211 | 0.15 |
| 14 | g16092.t1 | SMART | SM00355 | c2h2final6 | 218 | 242 | 0.008 |
| 21 | g16092.t1 | SMART | SM00355 | c2h2final6 | 247 | 270 | 0.25 |
| 23 | g16092.t1 | SMART | SM00355 | c2h2final6 | 276 | 298 | 5.2 |
| 20 | g16092.t1 | SMART | SM00355 | c2h2final6 | 307 | 330 | 0.16 |
| 19 | g16092.t1 | SMART | SM00355 | c2h2final6 | 337 | 359 | 17.0 |
| 18 | g16092.t1 | SMART | SM00355 | c2h2final6 | 365 | 390 | 5.3E-4 |
| 22 | g16092.t1 | SMART | SM00355 | c2h2final6 | 396 | 418 | 0.01 |
| 17 | g16092.t1 | SMART | SM00355 | c2h2final6 | 423 | 447 | 0.0089 |
| 16 | g16092.t1 | SMART | SM00355 | c2h2final6 | 453 | 475 | 2.8 |
| 13 | g16092.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 188 | 242 | 3.93E-5 |
| 12 | g16092.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 229 | 282 | 6.55E-7 |
| 11 | g16092.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 306 | 356 | 2.43E-6 |
| 10 | g16092.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 344 | 405 | 1.2E-10 |
| 9 | g16092.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 405 | 462 | 9.52E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
