General information for g16093.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 425.
Parent gene
- The parent gene g16093 is located on chr_4: 8128684..8130548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16093 | g16093.t1 | TTS | g16093.t1 | 8127058 | 8127058 |
| chr_4 | g16093 | g16093.t1 | isoform | g16093.t1 | 8127092 | 8129046 |
| chr_4 | g16093 | g16093.t1 | exon | g16093.t1.exon1 | 8127092 | 8127515 |
| chr_4 | g16093 | g16093.t1 | cds | g16093.t1.CDS1 | 8127092 | 8127515 |
| chr_4 | g16093 | g16093.t1 | exon | g16093.t1.exon2 | 8127577 | 8127750 |
| chr_4 | g16093 | g16093.t1 | cds | g16093.t1.CDS2 | 8127577 | 8127750 |
| chr_4 | g16093 | g16093.t1 | exon | g16093.t1.exon3 | 8127929 | 8127982 |
| chr_4 | g16093 | g16093.t1 | cds | g16093.t1.CDS3 | 8127929 | 8127982 |
| chr_4 | g16093 | g16093.t1 | exon | g16093.t1.exon4 | 8128042 | 8128152 |
| chr_4 | g16093 | g16093.t1 | cds | g16093.t1.CDS4 | 8128042 | 8128152 |
| chr_4 | g16093 | g16093.t1 | exon | g16093.t1.exon5 | 8128343 | 8129046 |
| chr_4 | g16093 | g16093.t1 | cds | g16093.t1.CDS5 | 8128343 | 8129046 |
| chr_4 | g16093 | g16093.t1 | TSS | g16093.t1 | 8129292 | 8129292 |
Sequences
>g16093.t1 Gene=g16093 Length=1467
ATGGATATTTTTGACTCCAGTGACATTTTAGAACATCAAACAGTTCTAAACAATGAATCT
CAAGAAGTCACAATAAAATCTGAAGAACCAGTCAATAAATCTGAAAAAAATTCACCAAAA
AAGTCACAAAAAAGATCAAAAAGACAAAAACTTGAAAATCCAGCAGAAGCATCAAAAAAA
TCTGATGAACAAAATCTTCAATGTCGACTTTGTCTCGCAACTATCAACACAAATAAAAGA
AATTCATTCGTAAAACTGACGAAGGATATTGAAAGAAAATTCAACGATGTGACACAAAAA
GTTCTTCACAATTCTGACCAGCTTTCCAAAATTCTTTGCTCAAAATGTGAGAAAGATTTA
AAAAATGCAATTGAATATCGTGAAAAACTTATAAATATTCAAAATCAACTTGAAAGTCAA
CTTCCAGGAGATAAGTTTGAAAATGTTGTTATAAAATGTGAAGTTAAAGATGAAAGTTAT
GATGATCCAGCAAATGATTATAATTTTAGTCTATTTGACTCTACACAATTGCTTGATCAA
ATGGAAGATGAAATTTTTACTCCTGAACCTTTCAAAAAAGTTATAGAATCAAAAGAAGAA
AAGAGAGCAAGGAAAGATAGAGAGAAAAAAGATCCAAGAGTTATATGTCCAGAATGTGGC
GTTATTTATGCTAATAAGCAGTCTTTGAAGAAACATATTGCAAATGTTCACATAAAATTA
AAGAAGTTTCAATGCGATAACTGCAATTATTCAACAACTACAAAACATTCATTGAAAAGT
CACATGAAAGTTCACATTGACAAAGCAGAAAGAAGAGTTCACAATTGCGATAAATGTTCT
TTTGTGTCAGTTTGTCAACAAAGCTTGAAACGACACTTGGAATATGAGCATAGCGGAATA
AGCTACGAATGTATTTGTGGTAAAAAATTCAATCAAAAAGGAACTTTGCAAACACACATC
AAATGTGTTCATGATAAAAAGAGAGATTTTGTATGTGAATGTGGCAAACAATATTTCAAA
AAAAGAGACCTTGAAGATCATATAAAACTTGTACACAATCCAAAACCAACAAAAGATTTC
AATTGTGAAAAATGTGGACGATCTTTCTATACACGAAAGCAACTATCAAGGCATTTGGTC
TATCATACAGATCTTCAATTTCAATGTCGTTATTGTGAAAAAGCTTATCATACTGATGCA
AAATTAAAACGACACATGAAAACTCATGAAGGAAATCGAGATTTGTTATGTCACTTATGC
GAAAAATCTTACTTTTTCACTCGTGATCTTCAAAGACATCTCGATGTTGTGCACAAACAG
ACAATTTATTTTTGTGAATTTTGTGAATTTACAAATAGCAGAAAAGATTATTTGGGAAAT
CACTTGAAAACTGCTCATCATTTAGTAAATAATGAGGAAAGAAATGAAGTTTTGGCAAGA
GCTAAATTTATTAAAAATAATGTTTAA
>g16093.t1 Gene=g16093 Length=488
MDIFDSSDILEHQTVLNNESQEVTIKSEEPVNKSEKNSPKKSQKRSKRQKLENPAEASKK
SDEQNLQCRLCLATINTNKRNSFVKLTKDIERKFNDVTQKVLHNSDQLSKILCSKCEKDL
KNAIEYREKLINIQNQLESQLPGDKFENVVIKCEVKDESYDDPANDYNFSLFDSTQLLDQ
MEDEIFTPEPFKKVIESKEEKRARKDREKKDPRVICPECGVIYANKQSLKKHIANVHIKL
KKFQCDNCNYSTTTKHSLKSHMKVHIDKAERRVHNCDKCSFVSVCQQSLKRHLEYEHSGI
SYECICGKKFNQKGTLQTHIKCVHDKKRDFVCECGKQYFKKRDLEDHIKLVHNPKPTKDF
NCEKCGRSFYTRKQLSRHLVYHTDLQFQCRYCEKAYHTDAKLKRHMKTHEGNRDLLCHLC
EKSYFFTRDLQRHLDVVHKQTIYFCEFCEFTNSRKDYLGNHLKTAHHLVNNEERNEVLAR
AKFIKNNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g16093.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 187 | 268 | 4.7E-13 |
| 16 | g16093.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 269 | 327 | 6.2E-7 |
| 18 | g16093.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 328 | 385 | 8.0E-10 |
| 15 | g16093.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 386 | 410 | 4.0E-5 |
| 14 | g16093.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 411 | 479 | 9.2E-8 |
| 33 | g16093.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 60 | - |
| 5 | g16093.t1 | PANTHER | PTHR24384:SF216 | CKII-ALPHA SUBUNIT INTERACTOR-1-RELATED | 17 | 383 | 7.9E-54 |
| 7 | g16093.t1 | PANTHER | PTHR24384 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 17 | 383 | 7.9E-54 |
| 6 | g16093.t1 | PANTHER | PTHR24384:SF216 | CKII-ALPHA SUBUNIT INTERACTOR-1-RELATED | 305 | 470 | 7.9E-54 |
| 8 | g16093.t1 | PANTHER | PTHR24384 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 305 | 470 | 7.9E-54 |
| 1 | g16093.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 68 | 139 | 9.9E-7 |
| 4 | g16093.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 243 | 265 | 6.7E-4 |
| 3 | g16093.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 360 | 382 | 0.0017 |
| 2 | g16093.t1 | Pfam | PF13894 | C2H2-type zinc finger | 387 | 409 | 7.8E-4 |
| 20 | g16093.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 216 | 237 | - |
| 22 | g16093.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 362 | 382 | - |
| 21 | g16093.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 389 | 409 | - |
| 19 | g16093.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 417 | 438 | - |
| 36 | g16093.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 214 | 242 | 9.452 |
| 38 | g16093.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 243 | 270 | 10.492 |
| 37 | g16093.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 302 | 329 | 10.346 |
| 35 | g16093.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 360 | 387 | 12.133 |
| 34 | g16093.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 387 | 414 | 12.778 |
| 23 | g16093.t1 | SMART | SM00868 | zf_AD_2 | 67 | 140 | 4.7E-5 |
| 25 | g16093.t1 | SMART | SM00355 | c2h2final6 | 214 | 237 | 0.012 |
| 30 | g16093.t1 | SMART | SM00355 | c2h2final6 | 243 | 265 | 3.9E-4 |
| 29 | g16093.t1 | SMART | SM00355 | c2h2final6 | 274 | 297 | 5.7 |
| 26 | g16093.t1 | SMART | SM00355 | c2h2final6 | 302 | 324 | 5.5 |
| 24 | g16093.t1 | SMART | SM00355 | c2h2final6 | 330 | 352 | 25.0 |
| 28 | g16093.t1 | SMART | SM00355 | c2h2final6 | 360 | 382 | 0.0042 |
| 27 | g16093.t1 | SMART | SM00355 | c2h2final6 | 387 | 409 | 0.0061 |
| 32 | g16093.t1 | SMART | SM00355 | c2h2final6 | 415 | 438 | 7.6 |
| 31 | g16093.t1 | SMART | SM00355 | c2h2final6 | 443 | 466 | 1.4 |
| 9 | g16093.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 68 | 139 | 9.41E-6 |
| 11 | g16093.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 215 | 265 | 5.24E-9 |
| 10 | g16093.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 310 | 369 | 2.86E-5 |
| 13 | g16093.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 358 | 409 | 1.77E-9 |
| 12 | g16093.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 401 | 435 | 6.33E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
