General information for g16094.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aldehyde dehydrogenase, dimeric NADP-preferring.
Parent gene
- The parent gene g16094 is located on chr_4: 8135015..8141389 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16094 | g16094.t9 | TSS | g16094.t9 | 8132276 | 8132276 |
| chr_4 | g16094 | g16094.t9 | isoform | g16094.t9 | 8132314 | 8133076 |
| chr_4 | g16094 | g16094.t9 | exon | g16094.t9.exon1 | 8132314 | 8132468 |
| chr_4 | g16094 | g16094.t9 | cds | g16094.t9.CDS1 | 8132314 | 8132468 |
| chr_4 | g16094 | g16094.t9 | exon | g16094.t9.exon2 | 8132561 | 8132736 |
| chr_4 | g16094 | g16094.t9 | cds | g16094.t9.CDS2 | 8132561 | 8132736 |
| chr_4 | g16094 | g16094.t9 | exon | g16094.t9.exon3 | 8132864 | 8133009 |
| chr_4 | g16094 | g16094.t9 | cds | g16094.t9.CDS3 | 8132864 | 8133009 |
| chr_4 | g16094 | g16094.t9 | exon | g16094.t9.exon4 | 8133065 | 8133076 |
| chr_4 | g16094 | g16094.t9 | cds | g16094.t9.CDS4 | 8133065 | 8133076 |
| chr_4 | g16094 | g16094.t9 | TTS | g16094.t9 | NA | NA |
Sequences
>g16094.t9 Gene=g16094 Length=489
ATGACATACGAGGACTTGATGAGTCGTGCCGCAACGGCATTTCAAAGCGGCAAAACCAAA
GATATTGATTTTAGAAGGAAACAGTTGAACGCATTGTTGCGAATGTATGAAGAGAATAAA
GATGAAATGGCACGCGTTTTGGCTGCTGATTTGAGACGACCAAAGCAAGAATCCTACATT
CTTGAAATTGAATTCCTTATAAATGACATCATCACAACAATCAACAGTCTCGATGAATGG
ACGAAGCCAATGAAACCTGAAAAAGGAATTGTCAATATGATGGATGATGTTTTGATTTAT
CCTGATCCTCTTGGTGTTGTTCTAGTCATGGGTGCATGGAATTATCCACTTCAACTCCCA
CTTGTTCCTTTTGGTGCTGCAATTGCAGCTGGAAATGTTGCCATATTAAAACCTAGTGAA
ATTTCAGTCAATTGTGCAAATTTCATTGCTGAAAATATTCCTAAATATTTGGATAATGAA
TGTTATCAT
>g16094.t9 Gene=g16094 Length=163
MTYEDLMSRAATAFQSGKTKDIDFRRKQLNALLRMYEENKDEMARVLAADLRRPKQESYI
LEIEFLINDIITTINSLDEWTKPMKPEKGIVNMMDDVLIYPDPLGVVLVMGAWNYPLQLP
LVPFGAAIAAGNVAILKPSEISVNCANFIAENIPKYLDNECYH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16094.t9 | Coils | Coil | Coil | 26 | 46 | - |
| 5 | g16094.t9 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 13 | 162 | 1.4E-47 |
| 2 | g16094.t9 | PANTHER | PTHR43570:SF29 | ALDEHYDE DEHYDROGENASE TYPE III, ISOFORM Q | 4 | 163 | 2.5E-66 |
| 3 | g16094.t9 | PANTHER | PTHR43570 | ALDEHYDE DEHYDROGENASE | 4 | 163 | 2.5E-66 |
| 1 | g16094.t9 | Pfam | PF00171 | Aldehyde dehydrogenase family | 3 | 152 | 5.2E-21 |
| 4 | g16094.t9 | SUPERFAMILY | SSF53720 | ALDH-like | 4 | 157 | 1.57E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
