General information for g16120.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase theta-1.
Parent gene
- The parent gene g16120 is located on chr_4: 8240977..8242928 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16120 | g16120.t2 | TSS | g16120.t2 | 8240936 | 8240936 |
| chr_4 | g16120 | g16120.t2 | isoform | g16120.t2 | 8240977 | 8241714 |
| chr_4 | g16120 | g16120.t2 | exon | g16120.t2.exon1 | 8240977 | 8241172 |
| chr_4 | g16120 | g16120.t2 | exon | g16120.t2.exon2 | 8241231 | 8241714 |
| chr_4 | g16120 | g16120.t2 | cds | g16120.t2.CDS1 | 8241250 | 8241714 |
| chr_4 | g16120 | g16120.t2 | TTS | g16120.t2 | 8241932 | 8241932 |
Sequences
>g16120.t2 Gene=g16120 Length=680
ATGAAATATTATTATAATTTACTTTCACAACCATCACGAGCTCTTTACATTTTTCTTAAG
CTCAATAACATTCCAGTTGAGTACAAAGATGTTAATTTATTAAATGGTGATCATTTAACA
GATGAGTTTAGAGAAATTAATCGTTTCCAAAAAGTTCCTTGTATTGTTGATGATGATGGA
TGGAAATTGGCAGAAAATATTTTTCAAGATATTTAATGTCAAAATACAAAAATATTCCCG
ACCATTTTTATCCATCTGAAATAAGAGCAAGAGCAGCTGTTGATGAATATCTTGAATGGC
AACATTTAAACACTCGTTTAGGTTGTGCCATTTATTTTCAAATTAAAAAGAAAATTGGTC
CATTTGCAGCAATATCAGAAAATCCTAACGAAGGAGCACTTCCAATTTTTAAATTTCTTA
TGGAATCAACTTTAGAAGCAATTGAAACTTTGTGGTTGAGAGGAAAGAAATTTTTATGTT
CTGATGAAATTTCTTTTGCTGATATAATTGCTGCTTGTGAAATTGAACAACCTCGTATGA
CGGGTTATGACATTTTTGAAAATCGTCCAAAATTAAAGGAATGGTACGAAAGAGTTAGGG
CTGCAACAAATCCACATTATGATGAAGCTCATGTGATTGTTAATAAAATTATAGCAAGAA
GTCAAAAAGCTAAACTTTAA
>g16120.t2 Gene=g16120 Length=154
MSKYKNIPDHFYPSEIRARAAVDEYLEWQHLNTRLGCAIYFQIKKKIGPFAAISENPNEG
ALPIFKFLMESTLEAIETLWLRGKKFLCSDEISFADIIAACEIEQPRMTGYDIFENRPKL
KEWYERVRAATNPHYDEAHVIVNKIIARSQKAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16120.t2 | CDD | cd03183 | GST_C_Theta | 18 | 145 | 0.000 |
| 4 | g16120.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 8 | 153 | 0.000 |
| 2 | g16120.t2 | PANTHER | PTHR43917 | - | 3 | 152 | 0.000 |
| 1 | g16120.t2 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 80 | 128 | 0.000 |
| 5 | g16120.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 15 | 154 | 12.587 |
| 3 | g16120.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 9 | 130 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
