General information for g16121.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase theta-1.
Parent gene
- The parent gene g16121 is located on chr_4: 8241974..8242693 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16121 | g16121.t2 | TSS | g16121.t2 | 8241904 | 8241904 |
| chr_4 | g16121 | g16121.t2 | isoform | g16121.t2 | 8241974 | 8242693 |
| chr_4 | g16121 | g16121.t2 | exon | g16121.t2.exon1 | 8241974 | 8242693 |
| chr_4 | g16121 | g16121.t2 | cds | g16121.t2.CDS1 | 8242241 | 8242693 |
| chr_4 | g16121 | g16121.t2 | TTS | g16121.t2 | 8243703 | 8243703 |
Sequences
>g16121.t2 Gene=g16121 Length=720
ATGAAATTTTATTATCATTTACTTTCACAACCATCAAGAGCTCTTTACATCTTTCTGAAA
CTCAATAATATCACAGCAGAATTTATTATAATCGATTTCCCCAATGGTGATCATTTAACA
GATGAATTTAAAGAAATTAATCGCTTCCAAAAAGTTCCTTGCATTGTTGATGATGATGGA
TGGAAATTAGCTGAAAGTATTGCAATTTTAAGGTAAAAAATTAATTTTTTTAAAAATATT
CTATATCAATTAATTTTTAGATATTTAATGTCAAAATACAAAAATATTCCTGATCATTTT
TATCCATCTGATATAAGAGCAAGAGCAGCAGTTGATGAATATCTTGAATGGCAACACATA
AATACTCGATTTGGTTGCGGAGTATATTTTCAGTTAAGGAAGAAAATTGGACCATTCGCG
GTTCTTTCAGAAGAAGCACTTCCAATTTTTAAATTTCTTATGGAATCAACTTTAGAAGCA
ATTGAAACTTTGTGGTTGAGAGGAAAGAAATTTTTATGTTCTGATGAAATTTCTTTTGCT
GATATAATTGCTGCTTGTGAAATTGAACAAGCTCGTATGACGGGTTATGATTTATTCGAA
AATCGACCTAGATTAAAAGAATGGTATGAAAAAGTTAAGGAGACAACAAATCCTTATTAT
GATGAAGCTCATGTGATTGTTAATAAAATTGTAGCAAGAAGTCAAAAAGCAAAGCTTTAA
>g16121.t2 Gene=g16121 Length=150
MSKYKNIPDHFYPSDIRARAAVDEYLEWQHINTRFGCGVYFQLRKKIGPFAVLSEEALPI
FKFLMESTLEAIETLWLRGKKFLCSDEISFADIIAACEIEQARMTGYDLFENRPRLKEWY
EKVKETTNPYYDEAHVIVNKIVARSQKAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16121.t2 | CDD | cd03183 | GST_C_Theta | 18 | 141 | 0.000 |
| 4 | g16121.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 8 | 149 | 0.000 |
| 2 | g16121.t2 | PANTHER | PTHR43917 | - | 3 | 148 | 0.000 |
| 1 | g16121.t2 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 76 | 123 | 0.000 |
| 5 | g16121.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 15 | 150 | 13.189 |
| 3 | g16121.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 9 | 126 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
