Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase theta-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16122 g16122.t1 TSS g16122.t1 8242886 8242886
chr_4 g16122 g16122.t1 isoform g16122.t1 8242946 8243670
chr_4 g16122 g16122.t1 exon g16122.t1.exon1 8242946 8243157
chr_4 g16122 g16122.t1 cds g16122.t1.CDS1 8242946 8243157
chr_4 g16122 g16122.t1 exon g16122.t1.exon2 8243212 8243360
chr_4 g16122 g16122.t1 cds g16122.t1.CDS2 8243212 8243360
chr_4 g16122 g16122.t1 exon g16122.t1.exon3 8243426 8243670
chr_4 g16122 g16122.t1 cds g16122.t1.CDS3 8243426 8243670
chr_4 g16122 g16122.t1 TTS g16122.t1 8243703 8243703

Sequences

>g16122.t1 Gene=g16122 Length=606
ATGAAATTTTATTATCATTTACTTTCACAACCATCAAGAGCTCTTTACATCTTTCTGAAA
CTCAATAACATTCCTGCAGAATTTATTACAATCAATTTCCCCAATGGTGATCATTTAACA
GATGAATTTAAAGAAATTAATCGCTTCCAAAAAGTTCCTTGTATTGTTGATGATGATGGA
TGGAAATTGTCTGAAAGTATTGCAATTTTAAGATATTTAATGTCAAAATACAAAAGTATT
CCGGACCATTTTTATCCATCTGATATAAGAGCAAGAGCAGCAGTTGATGAATATCTTGAA
TGGCAGCACATAAACACTCGATTTAGTTGCGGAGTATATTTTCAATTAAGAAAGAAAATT
GATGGATTAGACACATTGTGGTTGAGAGGAAAGAAATTTTTATGCTCGGATGAAATTTCT
TTTGCTGATATAATTGCTGCTTGTGAAATTGAACAAGCTCGTATGACTGGTGATGATTTA
TTTGAAAATCGACCTAAATTAAAAGAATGGTATGAAAGAGTTAAGGAGACAACAAATCCT
TATTATGATGAAGCTCATGTGATTGTTAATAAAATTGTAACTAAAAATCAAAAACCTAAA
CTTTGA

>g16122.t1 Gene=g16122 Length=201
MKFYYHLLSQPSRALYIFLKLNNIPAEFITINFPNGDHLTDEFKEINRFQKVPCIVDDDG
WKLSESIAILRYLMSKYKSIPDHFYPSDIRARAAVDEYLEWQHINTRFSCGVYFQLRKKI
DGLDTLWLRGKKFLCSDEISFADIIAACEIEQARMTGDDLFENRPKLKEWYERVKETTNP
YYDEAHVIVNKIVTKNQKPKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g16122.t1 CDD cd03050 GST_N_Theta 2 77 0.0000000
13 g16122.t1 CDD cd03183 GST_C_Theta 91 192 0.0000000
9 g16122.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 79 0.0000000
7 g16122.t1 Gene3D G3DSA:1.20.1050.10 - 81 118 0.0000000
8 g16122.t1 Gene3D G3DSA:1.20.1050.10 - 119 201 0.0000000
4 g16122.t1 PANTHER PTHR43917 - 2 113 0.0000000
3 g16122.t1 PANTHER PTHR43917 - 116 199 0.0000000
2 g16122.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 73 0.0000000
1 g16122.t1 Pfam PF00043 Glutathione S-transferase, C-terminal domain 127 174 0.0000001
11 g16122.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 81 21.8700000
10 g16122.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 59 201 11.5420000
14 g16122.t1 SFLD SFLDG00358 Main (cytGST) 1 176 0.0000000
15 g16122.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 176 0.0000000
5 g16122.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 92 0.0000000
6 g16122.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 82 177 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed