General information for g16122.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase theta-1.
Parent gene
- The parent gene g16122 is located on chr_4: 8242946..8243670 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16122 | g16122.t3 | TSS | g16122.t3 | 8242886 | 8242886 |
| chr_4 | g16122 | g16122.t3 | isoform | g16122.t3 | 8242946 | 8243670 |
| chr_4 | g16122 | g16122.t3 | exon | g16122.t3.exon1 | 8242946 | 8243157 |
| chr_4 | g16122 | g16122.t3 | cds | g16122.t3.CDS1 | 8242946 | 8243157 |
| chr_4 | g16122 | g16122.t3 | exon | g16122.t3.exon2 | 8243212 | 8243670 |
| chr_4 | g16122 | g16122.t3 | cds | g16122.t3.CDS2 | 8243212 | 8243425 |
| chr_4 | g16122 | g16122.t3 | TTS | g16122.t3 | 8243703 | 8243703 |
Sequences
>g16122.t3 Gene=g16122 Length=671
ATGAAATTTTATTATCATTTACTTTCACAACCATCAAGAGCTCTTTACATCTTTCTGAAA
CTCAATAACATTCCTGCAGAATTTATTACAATCAATTTCCCCAATGGTGATCATTTAACA
GATGAATTTAAAGAAATTAATCGCTTCCAAAAAGTTCCTTGTATTGTTGATGATGATGGA
TGGAAATTGTCTGAAAGTATTGCAATTTTAAGATATTTAATGTCAAAATACAAAAGTATT
CCGGACCATTTTTATCCATCTGATATAAGAGCAAGAGCAGCAGTTGATGAATATCTTGAA
TGGCAGCACATAAACACTCGATTTAGTTGCGGAGTATATTTTCAATTAAGAAAGAAAATT
GGTCCTTTCGCGGTTCTTTCAGAAGAAGCACTTCCGTTATTCAAATTTTTATGGAATCAA
CTTTAGATGGATTAGACACATTGTGGTTGAGAGGAAAGAAATTTTTATGCTCGGATGAAA
TTTCTTTTGCTGATATAATTGCTGCTTGTGAAATTGAACAAGCTCGTATGACTGGTGATG
ATTTATTTGAAAATCGACCTAAATTAAAAGAATGGTATGAAAGAGTTAAGGAGACAACAA
ATCCTTATTATGATGAAGCTCATGTGATTGTTAATAAAATTGTAACTAAAAATCAAAAAC
CTAAACTTTGA
>g16122.t3 Gene=g16122 Length=141
MKFYYHLLSQPSRALYIFLKLNNIPAEFITINFPNGDHLTDEFKEINRFQKVPCIVDDDG
WKLSESIAILRYLMSKYKSIPDHFYPSDIRARAAVDEYLEWQHINTRFSCGVYFQLRKKI
GPFAVLSEEALPLFKFLWNQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16122.t3 | CDD | cd03050 | GST_N_Theta | 2 | 77 | 0.000e+00 |
| 6 | g16122.t3 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 79 | 0.000e+00 |
| 5 | g16122.t3 | Gene3D | G3DSA:1.20.1050.10 | - | 81 | 131 | 0.000e+00 |
| 2 | g16122.t3 | PANTHER | PTHR43917 | - | 2 | 122 | 0.000e+00 |
| 1 | g16122.t3 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 4 | 73 | 0.000e+00 |
| 7 | g16122.t3 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 81 | 2.187e+01 |
| 9 | g16122.t3 | SFLD | SFLDG00358 | Main (cytGST) | 1 | 119 | 0.000e+00 |
| 10 | g16122.t3 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 1 | 119 | 0.000e+00 |
| 3 | g16122.t3 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 92 | 0.000e+00 |
| 4 | g16122.t3 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 72 | 122 | 6.410e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
