Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase theta-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16122 g16122.t4 TSS g16122.t4 8240848 8240848
chr_4 g16122 g16122.t4 isoform g16122.t4 8242946 8243670
chr_4 g16122 g16122.t4 exon g16122.t4.exon1 8242946 8243157
chr_4 g16122 g16122.t4 cds g16122.t4.CDS1 8242946 8243157
chr_4 g16122 g16122.t4 exon g16122.t4.exon2 8243209 8243670
chr_4 g16122 g16122.t4 cds g16122.t4.CDS2 8243209 8243425
chr_4 g16122 g16122.t4 TTS g16122.t4 8243703 8243703

Sequences

>g16122.t4 Gene=g16122 Length=674
ATGAAATTTTATTATCATTTACTTTCACAACCATCAAGAGCTCTTTACATCTTTCTGAAA
CTCAATAACATTCCTGCAGAATTTATTACAATCAATTTCCCCAATGGTGATCATTTAACA
GATGAATTTAAAGAAATTAATCGCTTCCAAAAAGTTCCTTGTATTGTTGATGATGATGGA
TGGAAATTGTCTGAAAGTATTGCAATTTTAAGAAGATATTTAATGTCAAAATACAAAAGT
ATTCCGGACCATTTTTATCCATCTGATATAAGAGCAAGAGCAGCAGTTGATGAATATCTT
GAATGGCAGCACATAAACACTCGATTTAGTTGCGGAGTATATTTTCAATTAAGAAAGAAA
ATTGGTCCTTTCGCGGTTCTTTCAGAAGAAGCACTTCCGTTATTCAAATTTTTATGGAAT
CAACTTTAGATGGATTAGACACATTGTGGTTGAGAGGAAAGAAATTTTTATGCTCGGATG
AAATTTCTTTTGCTGATATAATTGCTGCTTGTGAAATTGAACAAGCTCGTATGACTGGTG
ATGATTTATTTGAAAATCGACCTAAATTAAAAGAATGGTATGAAAGAGTTAAGGAGACAA
CAAATCCTTATTATGATGAAGCTCATGTGATTGTTAATAAAATTGTAACTAAAAATCAAA
AACCTAAACTTTGA

>g16122.t4 Gene=g16122 Length=142
MKFYYHLLSQPSRALYIFLKLNNIPAEFITINFPNGDHLTDEFKEINRFQKVPCIVDDDG
WKLSESIAILRRYLMSKYKSIPDHFYPSDIRARAAVDEYLEWQHINTRFSCGVYFQLRKK
IGPFAVLSEEALPLFKFLWNQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g16122.t4 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 80 0.0000000
5 g16122.t4 Gene3D G3DSA:1.20.1050.10 - 82 132 0.0000000
2 g16122.t4 PANTHER PTHR43917 - 2 123 0.0000000
1 g16122.t4 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 71 0.0000000
7 g16122.t4 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 82 17.6970000
8 g16122.t4 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 108 0.0000000
3 g16122.t4 SUPERFAMILY SSF52833 Thioredoxin-like 1 93 0.0000000
4 g16122.t4 SUPERFAMILY SSF47616 GST C-terminal domain-like 73 123 0.0000641

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed