General information for g1614.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myrosinase 1.
Parent gene
- The parent gene g1614 is located on chr_3: 12155767..12158025 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1614 | g1614.t1 | TTS | g1614.t1 | 12155728 | 12155728 |
| chr_3 | g1614 | g1614.t1 | isoform | g1614.t1 | 12155767 | 12158025 |
| chr_3 | g1614 | g1614.t1 | exon | g1614.t1.exon1 | 12155767 | 12156420 |
| chr_3 | g1614 | g1614.t1 | cds | g1614.t1.CDS1 | 12155767 | 12156420 |
| chr_3 | g1614 | g1614.t1 | exon | g1614.t1.exon2 | 12156773 | 12157300 |
| chr_3 | g1614 | g1614.t1 | cds | g1614.t1.CDS2 | 12156773 | 12157300 |
| chr_3 | g1614 | g1614.t1 | exon | g1614.t1.exon3 | 12157741 | 12158025 |
| chr_3 | g1614 | g1614.t1 | cds | g1614.t1.CDS3 | 12157741 | 12158025 |
| chr_3 | g1614 | g1614.t1 | TSS | g1614.t1 | 12158090 | 12158090 |
Sequences
>g1614.t1 Gene=g1614 Length=1467
ATGCATGGAATTTTAACGACATTTTTCATGTCAACAATTGTGAAAATTTCTTATACTTGT
GAAAATTCTACAACTATTGAAATTCCTGAAGATTTCATTTTCTCAGCTTCAACTTCTGCT
TATCAAATTGAAGGAGCTTGGAATGAAGACGGAAAAAGTCCAAGTGTTTGGGATACTTAT
ACTCATAATCATCCAGAAAAAATTGCTGATCATTCAAATGGAGATATTGCTGCTGATTCT
TATCATTTCTATAAAAAAGATGTTGAAGCATTGAAAAGTATTGGATTCAAACAATATAGA
TTTTCAATTTCGTGGCCAAGAGTCATAATTAATGGAACAAAAATTAATCAAAAAGGAATT
GATTATTATAATAATTTGATAAATGAATTAATTTCTAATGGAATTCAACCTGCTGTTACA
ATGTATCATTGGGATATTCCTCAATATCTTCAAGATTTGGGTGGTTTTGCTAATCCAATA
ATTTCTCAATATTTTGAATTTTATGCAAATGTTTTATTTACAAATTTTGGTGATCGTGTG
AAAATTTGGATGACATTCAATGAACCGTTAACAAATTGCATTGGTGAATATGGTGAAGGA
AGATCTGGAGCATCAGTAAGAGCACCTGGTGTTGGAGAATATTTATGCGGCCATCATGTT
TTGATTTCACATGCAAATGTTTATCATTTATATAAAGAAAAATTTTATAAAAAACAAAAA
GGAGAAATTGGAATAAGTTTGAATCTTCGATATAATTATCCAAAAGATGAAGTTATCACG
AAGGATTTCGTTATGAGAAGCTTGGATTTGGTTAATGGTTGGTTTCTAAATCCAATATTC
AGTAAAAATGGAGGCTATCCAGAAGAATTAGTGAAAATATTTGAGCAAAAAAGTATCGAA
GAAGGAATTTGGTCACGTTTGCCAATCATGAGTGAAGAATTAAAGAAAAAAATTAAAGGA
ACAGCTGATTTTCTTGGTGTCAATTATTATACATCACGATATGTTGCTCCAATAACTCAT
GGTGAAAATTTAAATAAATTCGATTATGACACTGGAATTTCTTATTCAATGGATAAAAAT
TGGTACAAAGGTATAACTGCATGGGCATACTCAGTTCCTGATGGTTTACATGATTTACTC
ATTTGGATTAGAGAAAAATACGAAAATCCTAAAATTATGATAACTGAAAATGGTTGGACT
GATAGTGGTGAAATGAATGATTTTGATAGAATTAAATATATTAAGGACCATTTGGCTGCA
GTTTTAAAAGCAAAAGAAGAAAATTGCAATATAATTGGTTACACAGTTTGGAGTTTAATT
GATAATTTTGAATGGAGTGAAGGATATACTGTTCATCTTGGGATTTTTGCTGTCAACATG
AGCAGTCCGGAAAAAGAAAGAATTCCAAAACGATCTGCGAGATTTCTCAAAGATTTGATT
GCAAATAAGAAATTTGAAATTTGTTAA
>g1614.t1 Gene=g1614 Length=488
MHGILTTFFMSTIVKISYTCENSTTIEIPEDFIFSASTSAYQIEGAWNEDGKSPSVWDTY
THNHPEKIADHSNGDIAADSYHFYKKDVEALKSIGFKQYRFSISWPRVIINGTKINQKGI
DYYNNLINELISNGIQPAVTMYHWDIPQYLQDLGGFANPIISQYFEFYANVLFTNFGDRV
KIWMTFNEPLTNCIGEYGEGRSGASVRAPGVGEYLCGHHVLISHANVYHLYKEKFYKKQK
GEIGISLNLRYNYPKDEVITKDFVMRSLDLVNGWFLNPIFSKNGGYPEELVKIFEQKSIE
EGIWSRLPIMSEELKKKIKGTADFLGVNYYTSRYVAPITHGENLNKFDYDTGISYSMDKN
WYKGITAWAYSVPDGLHDLLIWIREKYENPKIMITENGWTDSGEMNDFDRIKYIKDHLAA
VLKAKEENCNIIGYTVWSLIDNFEWSEGYTVHLGIFAVNMSSPEKERIPKRSARFLKDLI
ANKKFEIC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1614.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 18 | 487 | 7.4E-176 |
| 2 | g1614.t1 | PANTHER | PTHR10353:SF36 | CYTOSOLIC BETA-GLUCOSIDASE | 17 | 485 | 1.5E-152 |
| 3 | g1614.t1 | PANTHER | PTHR10353 | GLYCOSYL HYDROLASE | 17 | 485 | 1.5E-152 |
| 5 | g1614.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 321 | 335 | 9.6E-16 |
| 4 | g1614.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 392 | 400 | 9.6E-16 |
| 7 | g1614.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 407 | 418 | 9.6E-16 |
| 6 | g1614.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 428 | 445 | 9.6E-16 |
| 1 | g1614.t1 | Pfam | PF00232 | Glycosyl hydrolase family 1 | 27 | 484 | 4.6E-144 |
| 9 | g1614.t1 | ProSitePatterns | PS00653 | Glycosyl hydrolases family 1 N-terminal signature. | 32 | 46 | - |
| 8 | g1614.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 28 | 483 | 4.82E-145 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01188 (beta-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed