General information for g16141.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16141 is located on chr_4: 8355682..8356891 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16141 | g16141.t5 | TSS | g16141.t5 | 8354665 | 8354665 |
| chr_4 | g16141 | g16141.t5 | isoform | g16141.t5 | 8355682 | 8356285 |
| chr_4 | g16141 | g16141.t5 | exon | g16141.t5.exon1 | 8355682 | 8355835 |
| chr_4 | g16141 | g16141.t5 | cds | g16141.t5.CDS1 | 8355702 | 8355835 |
| chr_4 | g16141 | g16141.t5 | exon | g16141.t5.exon2 | 8355892 | 8355983 |
| chr_4 | g16141 | g16141.t5 | cds | g16141.t5.CDS2 | 8355892 | 8355983 |
| chr_4 | g16141 | g16141.t5 | exon | g16141.t5.exon3 | 8356041 | 8356105 |
| chr_4 | g16141 | g16141.t5 | cds | g16141.t5.CDS3 | 8356041 | 8356105 |
| chr_4 | g16141 | g16141.t5 | exon | g16141.t5.exon4 | 8356166 | 8356285 |
| chr_4 | g16141 | g16141.t5 | cds | g16141.t5.CDS4 | 8356166 | 8356285 |
| chr_4 | g16141 | g16141.t5 | TTS | g16141.t5 | 8357268 | 8357268 |
Sequences
>g16141.t5 Gene=g16141 Length=431
TCCTATTAAAACTTCATTTAATGGATTATTCATTACTGATTGGTATTCATGATGTGCGGC
AAGCAGCAGAAGATGCTGAAGCACGTGGTGATGGAAATCGAAGTGATCCACATCATGACA
GTGAAAGTGAAAATGAATATGATAGTGGAGAAAGATGGGAAAATACACCACCAGATTCAC
CTCGTCAAGCTGATGCTCATGTTATAAATCCAGACATTGACGTTTATGCTGTTGCAAGTC
AAGAAGAAAATCAATTTATTTATTTCATGGCGATAATTGATCCATTGACGAATTATGGAT
TAAAAAAACAAGCAGCCAAAGCAGCAAAGACAGTGAAATATGGAAGCAATGTTGATGGAA
TAAGCACCTGTGATCCGGAACAGTACGCCAAGCGATTCCTTGAGTTCATAAATGATAAAG
TCATTGAATAA
>g16141.t5 Gene=g16141 Length=136
MDYSLLIGIHDVRQAAEDAEARGDGNRSDPHHDSESENEYDSGERWENTPPDSPRQADAH
VINPDIDVYAVASQEENQFIYFMAIIDPLTNYGLKKQAAKAAKTVKYGSNVDGISTCDPE
QYAKRFLEFINDKVIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16141.t5 | Coils | Coil | Coil | 127 | 136 | - |
| 7 | g16141.t5 | Gene3D | G3DSA:3.30.810.10 | - | 1 | 134 | 2.6E-24 |
| 5 | g16141.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 48 | - |
| 6 | g16141.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 57 | - |
| 2 | g16141.t5 | PANTHER | PTHR23086:SF21 | PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 ALPHA | 1 | 132 | 2.9E-24 |
| 3 | g16141.t5 | PANTHER | PTHR23086 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | 1 | 132 | 2.9E-24 |
| 1 | g16141.t5 | Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1 | 132 | 1.3E-22 |
| 9 | g16141.t5 | ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1 | 134 | 21.205 |
| 4 | g16141.t5 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1 | 134 | 4.38E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016307 | phosphatidylinositol phosphate kinase activity | MF |
| GO:0046488 | phosphatidylinositol metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
