General information for g16154.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16154 is located on chr_4: 8379528..8381966 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16154 | g16154.t1 | isoform | g16154.t1 | 8379528 | 8381966 |
| chr_4 | g16154 | g16154.t1 | exon | g16154.t1.exon1 | 8379528 | 8381966 |
| chr_4 | g16154 | g16154.t1 | cds | g16154.t1.CDS1 | 8379528 | 8381966 |
| chr_4 | g16154 | g16154.t1 | TSS | g16154.t1 | NA | NA |
| chr_4 | g16154 | g16154.t1 | TTS | g16154.t1 | NA | NA |
Sequences
>g16154.t1 Gene=g16154 Length=2439
ATGGATCAAATTCAATCACAAATCAACAGCATCGAAATCAAACGTCTTGAATCAGAATTG
AAATTTTCACAACAACAACTTGCATCAGCCATTGAATCAAAATGTTCAGCAATTGCCAAA
TATGAAGAAACTCAACACAAAATGCTCGAAATCAACTTCAAAGAGCAACGGATGAATCAA
GAAAAAATTTTAATGCAAAATCAACTTGAAATGCTCAAAAATGATCTCAATCGAAATATT
CAAGAATTTCAACAATTTCGAGTTGATTCATCAAATCGTTGTGTCTCACTTGAAGCAAAA
TATCATGAGAAATGTGAAGAACTCAATATCGCACTATTGCAGTCATCACAATTGAAAGAA
TCAAATGAAATTTTGAGTGAAAAAGTCAAAGAATTTTCAAAACAAATTTTATTATTAAAT
GAAGATTTTTCAATATCAAAAAAGAAATATTTGGCAGAATTGTCAGCAAAATCGAGACTC
ATTGAGTTGTATAAAGAGAAAAGTCAAGATTCAGATGATCATCATCGTGAAATGACAGAT
GCAATGACAATTTTAAGATCAGCATTGAAAGAAGCAAGTGAAGAATTTTCAAAACTTGCT
ATGAAAAATAAAAATGATGAAATGCAACATAAAATTGATATGGAAACCAATAAAAGTGAA
TTGAATAATGCAAATTGCTTGCTTAATTCATGCATCAATGATAATTTTGAAAATGGTCAA
CATTCAGTGAGTTCAGTTTATAACAATTATATCAATGCCATGGAAGATATCGAAAAATTG
TCAATTGATCATGAAGAATTGAAGGAAAAATTTTCAAATCTTTTCAATGAAGTCAATGAA
TTGCGACCAATGAAGAATATAAAAATCAAATATGAACAATTAATGGAACAAAAAGAAGAA
GCAGAAAAGAAAATTCAAAAACTTGAAAATTCTCTCAAAAATTGTGAGAAAAAACTCGAT
CAAAATCATCAAGATCGAATTGCAATGAATCATCAAATTTACAGTTTATTGAGTGTCATT
GAAAGCAGAAAAGTTAGTGGTGAAACAAGAACTTATGATTTTATATTGCATAATTTTGGC
ACTTACAAAGATATTGAAGAATTGCAAGAAAATAATTTGAAATTGATGCACATTGTGAAA
GAATTGTCAGCAAAAGTTGATGAATTAGAAAAGATAAAAATTCACAATGAAAATTTAGAA
ATTTCATCTGAAACAACTCAAACAGCTTCAAGTTTTGATTCTGATTCTTTTGAATCGATA
ACAGAAAAAATTATGCAAGATCAAGTCACACAAACTTGTGAAAATTCCCAAGAAATTAAA
ATGGAAAATTTCATTGAAATTCAAACTAAAAATTTACAACTTTTGGCCAAAATTGAAGAT
CTCAAAAATCAACTCGAATTGTATGAGAAAAATCACGAATTGGCACAAAAAATGATTCAA
AATTTGAACGAGAAAAATTCAAAACTTTCATCAACAATTTTGAAACTTGAAGAAAATTTG
AAAGAGCAAAAACTTGAAAATCAAGAAACAAAATTAAAACTGCAAAATTCTCAAAATTCA
CTTGAAAAACTCGAGAAAGAAAATCAAAAATTGATTTTGACTGCAGTTGAAGAAAAAGCA
AAATTTGATGCACAATTGAAAATTTCTCAAAGCAGCAATCACATGATGACAAATTTGGAA
TTCATTCGAGCATCAATTGAGAGAATTGAAAGTGAAGGAAGTGCCAAAATTATGCAGCAA
CAGTTGGAAAATGAAAGAAAAAATTTCATCAGTGAAAATGAAAAATTAAAAGACGAAATT
TTGAGATTTTCAAAAATTTGCAATCAAAAATCTCAAGAAATTCAAAATATGACTGAAAAA
TTACAAAAAGATGCAGAAAATTCTGAGAAAAAATTGAAAAAAGTTTTTGATGAAAAATCG
AAAGAAATTCAAATTTTGAAAGAAAAACTTGAAAAATTTGAGCAAAAATCAACAAAAGAT
GTCGAAATTCAAGTGGTTGACACTGAAAGTGAACAAGAAATGACAAAATTGAAAGAAAAT
CTTGCACAAGTAAGAAAAATTGGCAAACGTTATAGAGAAGAAACTTTTGAGCTAAAAAAT
CAACTTGAAAATGCACAAAAAGCAACAGAAATGAAAAATGAAGAACTTTCGAGTGCACAA
GAAAAAGAAGAATTGATGAAAAATTTGCTCATTAAATCAAGAGAAATGTTGACAAAATTG
ACTGCTGAAAATGAAAAATTATTGCAAGAAAAAGAAAATTTGACAAAGAAAAGACTTCGA
GTTGATGACGGAGAAGAAGAAAATGATGAAGCTGCAGTTGAGAAAAAATTTAAAATTGAA
GAAGAAATTTTGGAAGAAGAAGAAAAAGTTTTAGAAGAGAAAATTAAAGTCGAAGAAAAT
TCTGAATCGAATGAGGAAATTAAAAATGAAAATTTGTAA
>g16154.t1 Gene=g16154 Length=812
MDQIQSQINSIEIKRLESELKFSQQQLASAIESKCSAIAKYEETQHKMLEINFKEQRMNQ
EKILMQNQLEMLKNDLNRNIQEFQQFRVDSSNRCVSLEAKYHEKCEELNIALLQSSQLKE
SNEILSEKVKEFSKQILLLNEDFSISKKKYLAELSAKSRLIELYKEKSQDSDDHHREMTD
AMTILRSALKEASEEFSKLAMKNKNDEMQHKIDMETNKSELNNANCLLNSCINDNFENGQ
HSVSSVYNNYINAMEDIEKLSIDHEELKEKFSNLFNEVNELRPMKNIKIKYEQLMEQKEE
AEKKIQKLENSLKNCEKKLDQNHQDRIAMNHQIYSLLSVIESRKVSGETRTYDFILHNFG
TYKDIEELQENNLKLMHIVKELSAKVDELEKIKIHNENLEISSETTQTASSFDSDSFESI
TEKIMQDQVTQTCENSQEIKMENFIEIQTKNLQLLAKIEDLKNQLELYEKNHELAQKMIQ
NLNEKNSKLSSTILKLEENLKEQKLENQETKLKLQNSQNSLEKLEKENQKLILTAVEEKA
KFDAQLKISQSSNHMMTNLEFIRASIERIESEGSAKIMQQQLENERKNFISENEKLKDEI
LRFSKICNQKSQEIQNMTEKLQKDAENSEKKLKKVFDEKSKEIQILKEKLEKFEQKSTKD
VEIQVVDTESEQEMTKLKENLAQVRKIGKRYREETFELKNQLENAQKATEMKNEELSSAQ
EKEELMKNLLIKSREMLTKLTAENEKLLQEKENLTKKRLRVDDGEEENDEAAVEKKFKIE
EEILEEEEKVLEEKIKVEENSESNEEIKNENL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16154.t1 | Coils | Coil | Coil | 13 | 33 | - |
| 12 | g16154.t1 | Coils | Coil | Coil | 55 | 75 | - |
| 3 | g16154.t1 | Coils | Coil | Coil | 115 | 135 | - |
| 7 | g16154.t1 | Coils | Coil | Coil | 175 | 195 | - |
| 4 | g16154.t1 | Coils | Coil | Coil | 250 | 277 | - |
| 6 | g16154.t1 | Coils | Coil | Coil | 284 | 325 | - |
| 13 | g16154.t1 | Coils | Coil | Coil | 365 | 385 | - |
| 9 | g16154.t1 | Coils | Coil | Coil | 444 | 541 | - |
| 11 | g16154.t1 | Coils | Coil | Coil | 579 | 599 | - |
| 5 | g16154.t1 | Coils | Coil | Coil | 607 | 656 | - |
| 14 | g16154.t1 | Coils | Coil | Coil | 674 | 722 | - |
| 8 | g16154.t1 | Coils | Coil | Coil | 730 | 757 | - |
| 15 | g16154.t1 | Coils | Coil | Coil | 774 | 801 | - |
| 2 | g16154.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 776 | - |
| 1 | g16154.t1 | PANTHER | PTHR18898 | NUCLEOPROTEIN TPR-RELATED | 12 | 585 | 5.0E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed