General information for g16156.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16156 is located on chr_4: 8385958..8388067 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16156 | g16156.t1 | isoform | g16156.t1 | 8385958 | 8388067 |
| chr_4 | g16156 | g16156.t1 | exon | g16156.t1.exon1 | 8385958 | 8385969 |
| chr_4 | g16156 | g16156.t1 | cds | g16156.t1.CDS1 | 8385958 | 8385969 |
| chr_4 | g16156 | g16156.t1 | exon | g16156.t1.exon2 | 8386043 | 8388067 |
| chr_4 | g16156 | g16156.t1 | cds | g16156.t1.CDS2 | 8386043 | 8388067 |
| chr_4 | g16156 | g16156.t1 | TSS | g16156.t1 | NA | NA |
| chr_4 | g16156 | g16156.t1 | TTS | g16156.t1 | NA | NA |
Sequences
>g16156.t1 Gene=g16156 Length=2037
ATGGATCAAATTCAATCACAAATCAACAGCATCGAATTCAAACGTCTTGAATCAGAATTG
AAATTTTCACAACAACAACTTGCATCAGCCATTGAATCAAAATGTTCAGCAATTACCAAA
TATGAAGAAACTCAACACAAAATGCTCGAAATCAACTTCAAAGAGCAACGGATGAATCAA
GAAAAAATTTTAATGCAAAATCAACTTGAAATTCTCAAAAATGACCTCAATCGAAATATT
CAAGAATTCCAACAATTTCGAGTTGATTCATCAAATCGTTGTGTCTCACTTGAGGCAAAA
TATCATGAGAAATGTGAAGAACTCAATATCGCACTATTGCAGTCATCACAATTGAAAGAA
TCAAATGAAATATTAAGTGAAAAAGTCAAAGAATTTTCAAAACAAATTTTATCATTAAAT
GAAGAATTTTCAATATCAAAAAAGAAATATTTGGCAGAATTGACAGCAAAATCGAGACTC
ATTGAGTTGTATAAAGAGAAAAGCCAAGATTCAGATGATCATCATCGTGAAATGACAGAT
GCAATGACAATTTTAAGATCAGCATTGAAAGAAGCAAGTGAAGAATTTTCAAAACTTGCT
ATGAAAAATAAAAATGATGAAATGCAACATAAAATTGATATGGAAGCGATTAAAAGTGAA
TTGAATAATGCAAATTGCTTGCTTAATTCATGCATCAATGATAATTTTGAAAATGGTCAA
CATTCAGTGAGTTCAGTTTATAACAATTATATCAATGCCATGGAAGATATCGAAAAATTG
TCAATTGAGCATGAAGAATTGAAGGAAAAATTTTCAAATCTTTTCAATGAAGTCAATGAA
TTGCGACCAATGAAAAATTTAAAAATCAAATATGAACAATCAATAGAACAAAAAGAAGAA
GCAGAAAAGAAAATTGAAAAACTTGAAAATTCTCTCAAAAATTGTGAGAAAAAACTCGAT
CAAAATCATCAAGATCGAATTGCAATGAATCATCAAATTTACAGTTTATTGAGTGTCATT
GAAGGCAGAAAAGTGAGCGGTGAAACAAGAACTTATGATTTTATATTGCATAATTTTGGC
ACTTACAAAGATATTGAAGAATTGCAAGAAAATAATTTGAAATTGATGCACATTGTGAAA
GAATTGTCAGTAAAAGTTGATGAATTAGAAAAGATGAAAATTGACAGAGAAAATTTAGAA
ATTTCATCTGAAACAACTCAAACAGCTTCAAGTTTTGATTCTGATTCTTTTGAATCGATA
ACAGAAAAAATTATGCAAGATCAAGTCACACAAACTTGTGAAAATTCCCAAGAAATTAAA
ATGGAAAATTTCATTGAAATTCAAACTAAAAATTTACAACTTTTGGCCAAAATTGAAGAT
CTCAAAAATCAACTCGAATTGTATGAGAAAAATCATGAAATGGCACAAAAAATGATTCAA
AATTTGAGTGAGAAAAATTCAAAATTTTCATCAACAATTTCAAAACTTGAAGAAAATTTG
AATGAGCAAAAAATTGAAAATCAAGAAACAAAATTGAAATTACAAAATTCTCAAAATTCA
CTTGAAAAACTCGAGAAAGAAAATCAAAAATTGATTTTGACTGCAGTTGAAGAAAAAGCA
AAATTTGATGCACAGTTGAAAATTTCTCAAAGTAGCAATCACATGATGACAAATTTGGAA
TTCATTCGAGCATCCATTGAGAGAATTGAAAGTGAAGGAAGTGCCAAAATTATGCAGCAA
CAGTTGGAAAATGAAAGAAAAAATTTCATCAGTGAAAATGAAAAATTAAAAGACGAAATT
TTGAGATTTTCAAAAGTTTCTGATCAAAAATCTCAAGAAATTCAAAATTTGACTGAAAAA
TCACAAAAAGATGCAGAAAATTTTGAGAAAAAATTGAAAGAAATTCAAATTTTGAAAGAA
AAACTTGAAAAATTTGAGCAAAAATCAACAAGAAATGTCGAAATTCAAGTGGTTGACACT
GAAAGTGAACAAGAAATGACAAAATTGAAAGAAAATCTTGCACAACGACCGAAATGA
>g16156.t1 Gene=g16156 Length=678
MDQIQSQINSIEFKRLESELKFSQQQLASAIESKCSAITKYEETQHKMLEINFKEQRMNQ
EKILMQNQLEILKNDLNRNIQEFQQFRVDSSNRCVSLEAKYHEKCEELNIALLQSSQLKE
SNEILSEKVKEFSKQILSLNEEFSISKKKYLAELTAKSRLIELYKEKSQDSDDHHREMTD
AMTILRSALKEASEEFSKLAMKNKNDEMQHKIDMEAIKSELNNANCLLNSCINDNFENGQ
HSVSSVYNNYINAMEDIEKLSIEHEELKEKFSNLFNEVNELRPMKNLKIKYEQSIEQKEE
AEKKIEKLENSLKNCEKKLDQNHQDRIAMNHQIYSLLSVIEGRKVSGETRTYDFILHNFG
TYKDIEELQENNLKLMHIVKELSVKVDELEKMKIDRENLEISSETTQTASSFDSDSFESI
TEKIMQDQVTQTCENSQEIKMENFIEIQTKNLQLLAKIEDLKNQLELYEKNHEMAQKMIQ
NLSEKNSKFSSTISKLEENLNEQKIENQETKLKLQNSQNSLEKLEKENQKLILTAVEEKA
KFDAQLKISQSSNHMMTNLEFIRASIERIESEGSAKIMQQQLENERKNFISENEKLKDEI
LRFSKVSDQKSQEIQNLTEKSQKDAENFEKKLKEIQILKEKLEKFEQKSTRNVEIQVVDT
ESEQEMTKLKENLAQRPK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16156.t1 | Coils | Coil | Coil | 13 | 33 | - |
| 10 | g16156.t1 | Coils | Coil | Coil | 55 | 75 | - |
| 4 | g16156.t1 | Coils | Coil | Coil | 115 | 142 | - |
| 6 | g16156.t1 | Coils | Coil | Coil | 175 | 195 | - |
| 3 | g16156.t1 | Coils | Coil | Coil | 250 | 277 | - |
| 5 | g16156.t1 | Coils | Coil | Coil | 284 | 325 | - |
| 11 | g16156.t1 | Coils | Coil | Coil | 365 | 385 | - |
| 7 | g16156.t1 | Coils | Coil | Coil | 444 | 541 | - |
| 9 | g16156.t1 | Coils | Coil | Coil | 579 | 599 | - |
| 2 | g16156.t1 | Coils | Coil | Coil | 618 | 648 | - |
| 1 | g16156.t1 | PANTHER | PTHR18898 | NUCLEOPROTEIN TPR-RELATED | 12 | 675 | 1.2E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K11547 (kinetochore protein NDC80)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed