Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16156 g16156.t2 isoform g16156.t2 8385958 8387524
chr_4 g16156 g16156.t2 exon g16156.t2.exon1 8385958 8385969
chr_4 g16156 g16156.t2 cds g16156.t2.CDS1 8385958 8385969
chr_4 g16156 g16156.t2 exon g16156.t2.exon2 8386043 8387524
chr_4 g16156 g16156.t2 cds g16156.t2.CDS2 8386043 8387524
chr_4 g16156 g16156.t2 TSS g16156.t2 NA NA
chr_4 g16156 g16156.t2 TTS g16156.t2 NA NA

Sequences

>g16156.t2 Gene=g16156 Length=1494
ATGACAATTTTAAGATCAGCATTGAAAGAAGCAAGTGAAGAATTTTCAAAACTTGCTATG
AAAAATAAAAATGATGAAATGCAACATAAAATTGATATGGAAGCGATTAAAAGTGAATTG
AATAATGCAAATTGCTTGCTTAATTCATGCATCAATGATAATTTTGAAAATGGTCAACAT
TCAGTGAGTTCAGTTTATAACAATTATATCAATGCCATGGAAGATATCGAAAAATTGTCA
ATTGAGCATGAAGAATTGAAGGAAAAATTTTCAAATCTTTTCAATGAAGTCAATGAATTG
CGACCAATGAAAAATTTAAAAATCAAATATGAACAATCAATAGAACAAAAAGAAGAAGCA
GAAAAGAAAATTGAAAAACTTGAAAATTCTCTCAAAAATTGTGAGAAAAAACTCGATCAA
AATCATCAAGATCGAATTGCAATGAATCATCAAATTTACAGTTTATTGAGTGTCATTGAA
GGCAGAAAAGTGAGCGGTGAAACAAGAACTTATGATTTTATATTGCATAATTTTGGCACT
TACAAAGATATTGAAGAATTGCAAGAAAATAATTTGAAATTGATGCACATTGTGAAAGAA
TTGTCAGTAAAAGTTGATGAATTAGAAAAGATGAAAATTGACAGAGAAAATTTAGAAATT
TCATCTGAAACAACTCAAACAGCTTCAAGTTTTGATTCTGATTCTTTTGAATCGATAACA
GAAAAAATTATGCAAGATCAAGTCACACAAACTTGTGAAAATTCCCAAGAAATTAAAATG
GAAAATTTCATTGAAATTCAAACTAAAAATTTACAACTTTTGGCCAAAATTGAAGATCTC
AAAAATCAACTCGAATTGTATGAGAAAAATCATGAAATGGCACAAAAAATGATTCAAAAT
TTGAGTGAGAAAAATTCAAAATTTTCATCAACAATTTCAAAACTTGAAGAAAATTTGAAT
GAGCAAAAAATTGAAAATCAAGAAACAAAATTGAAATTACAAAATTCTCAAAATTCACTT
GAAAAACTCGAGAAAGAAAATCAAAAATTGATTTTGACTGCAGTTGAAGAAAAAGCAAAA
TTTGATGCACAGTTGAAAATTTCTCAAAGTAGCAATCACATGATGACAAATTTGGAATTC
ATTCGAGCATCCATTGAGAGAATTGAAAGTGAAGGAAGTGCCAAAATTATGCAGCAACAG
TTGGAAAATGAAAGAAAAAATTTCATCAGTGAAAATGAAAAATTAAAAGACGAAATTTTG
AGATTTTCAAAAGTTTCTGATCAAAAATCTCAAGAAATTCAAAATTTGACTGAAAAATCA
CAAAAAGATGCAGAAAATTTTGAGAAAAAATTGAAAGAAATTCAAATTTTGAAAGAAAAA
CTTGAAAAATTTGAGCAAAAATCAACAAGAAATGTCGAAATTCAAGTGGTTGACACTGAA
AGTGAACAAGAAATGACAAAATTGAAAGAAAATCTTGCACAACGACCGAAATGA

>g16156.t2 Gene=g16156 Length=497
MTILRSALKEASEEFSKLAMKNKNDEMQHKIDMEAIKSELNNANCLLNSCINDNFENGQH
SVSSVYNNYINAMEDIEKLSIEHEELKEKFSNLFNEVNELRPMKNLKIKYEQSIEQKEEA
EKKIEKLENSLKNCEKKLDQNHQDRIAMNHQIYSLLSVIEGRKVSGETRTYDFILHNFGT
YKDIEELQENNLKLMHIVKELSVKVDELEKMKIDRENLEISSETTQTASSFDSDSFESIT
EKIMQDQVTQTCENSQEIKMENFIEIQTKNLQLLAKIEDLKNQLELYEKNHEMAQKMIQN
LSEKNSKFSSTISKLEENLNEQKIENQETKLKLQNSQNSLEKLEKENQKLILTAVEEKAK
FDAQLKISQSSNHMMTNLEFIRASIERIESEGSAKIMQQQLENERKNFISENEKLKDEIL
RFSKVSDQKSQEIQNLTEKSQKDAENFEKKLKEIQILKEKLEKFEQKSTRNVEIQVVDTE
SEQEMTKLKENLAQRPK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g16156.t2 Coils Coil Coil 69 96 -
3 g16156.t2 Coils Coil Coil 103 144 -
2 g16156.t2 Coils Coil Coil 184 204 -
1 g16156.t2 Coils Coil Coil 263 360 -
6 g16156.t2 Coils Coil Coil 398 418 -
5 g16156.t2 Coils Coil Coil 437 467 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed