General information for g1624.t45
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Alcohol dehydrogenase class-3 chain L.
Parent gene
- The parent gene g1624 is located on chr_3: 12203453..12213992 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1624 | g1624.t45 | TSS | g1624.t45 | 12202430 | 12202430 |
| chr_3 | g1624 | g1624.t45 | isoform | g1624.t45 | 12203453 | 12204684 |
| chr_3 | g1624 | g1624.t45 | exon | g1624.t45.exon1 | 12203453 | 12203879 |
| chr_3 | g1624 | g1624.t45 | cds | g1624.t45.CDS1 | 12203580 | 12203879 |
| chr_3 | g1624 | g1624.t45 | exon | g1624.t45.exon2 | 12204428 | 12204684 |
| chr_3 | g1624 | g1624.t45 | cds | g1624.t45.CDS2 | 12204428 | 12204463 |
| chr_3 | g1624 | g1624.t45 | TTS | g1624.t45 | NA | NA |
Sequences
>g1624.t45 Gene=g1624 Length=684
GAAGACAGCAAAAGTAAGAGAAGGATCGACAGCAGCTGTTTGGGGACTTGGAACAATTGG
TCTTGCCTGTATACTTGGTTGTAAAAATGCTGGTGCTTCAAAAATCATTGGAATTGATAA
AAATCCTATGAAAGAACAGATTGCGAAAGAATTTGGCTGCACAGACTTTATAAATGCAGG
AGATGTTTCGAAATCAATAGAAGAATATTTGAATAAAAAATATGGCATGATTGATTACAC
TTTTGAGTGCGTAGGAACAATTCCAACAATGAAACAAGCATTCAAAACTGCAGCACTCGG
TTACGGTGTATGTGTTCTTGTTGGTGTAAGTCCACAAGATGAAGAAATTAATCTTTCACC
AATTGACTTTCTTCTTGGCCGTAAATTGACGGGAGAACTTTTTGGTTCATACAAAAGTGT
AGATGATAACCGGTGTTTTCAACGTGATATGGTCGTTGACTAAAGTCAATCTAAAAATTT
GTAATTTAAAAGTGAACTGAAAAATTTCAAATTTATGAAAACAATTTTTTAAATCAATTT
AAAGTGATAGAACACACATCAAGAAAACTATGATAAATATTATTTTAAAAAAATTTTCCT
GTAACAAAAACAAGGTATAAACAAACTTTCTTAATTTTTTTTGAATATTTTTTATTAAAG
AAGAAAAACAAAGGGTGATAAAAT
>g1624.t45 Gene=g1624 Length=111
MKEQIAKEFGCTDFINAGDVSKSIEEYLNKKYGMIDYTFECVGTIPTMKQAFKTAALGYG
VCVLVGVSPQDEEINLSPIDFLLGRKLTGELFGSYKSVDDNRCFQRDMVVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1624.t45 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 90 | 0 |
| 5 | g1624.t45 | Gene3D | G3DSA:3.90.180.10 | - | 91 | 100 | 0 |
| 2 | g1624.t45 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 2 | 101 | 0 |
| 1 | g1624.t45 | Pfam | PF00107 | Zinc-binding dehydrogenase | 3 | 95 | 0 |
| 3 | g1624.t45 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 100 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed