General information for g16257.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cubilin-like protein.
Parent gene
- The parent gene g16257 is located on chr_4: 8875561..8884544 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16257 | g16257.t1 | TTS | g16257.t1 | 8874961 | 8874961 |
| chr_4 | g16257 | g16257.t1 | isoform | g16257.t1 | 8875561 | 8884544 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon1 | 8875561 | 8875583 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS1 | 8875561 | 8875583 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon2 | 8875643 | 8881389 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS2 | 8875643 | 8881389 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon3 | 8881574 | 8881727 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS3 | 8881574 | 8881727 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon4 | 8881892 | 8882994 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS4 | 8881892 | 8882994 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon5 | 8883183 | 8883977 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS5 | 8883183 | 8883977 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon6 | 8884128 | 8884326 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS6 | 8884128 | 8884326 |
| chr_4 | g16257 | g16257.t1 | exon | g16257.t1.exon7 | 8884541 | 8884544 |
| chr_4 | g16257 | g16257.t1 | cds | g16257.t1.CDS7 | 8884541 | 8884544 |
| chr_4 | g16257 | g16257.t1 | TSS | g16257.t1 | NA | NA |
Sequences
>g16257.t1 Gene=g16257 Length=8025
ATGATATGCGGTGGAAGTTTTCATTCAACACGAGGCACAATTCGTAGTCCTGGAAGTCCT
CAATATTTTCCTAATAAAGATTGTGAATGGACAATCACAGTCCCTAATGGTCAACAAATT
GAAATAAATTTTAAATATTTTGATATTGAAGCTCATGCAACTTGTCGATTTGATGGATTG
GAAGTTAGAAATGGTGGAAATAATCTCGCGCCGTTACTTGGAAAATTCTGTGGCGATACA
GCTCCAGTACCATTTAAATCATTGGGCAATCAACTTTATTTCAAATTCTATTCAGATTCA
TCACGTAGTGGAGCTGGTTTTGAATTAGAATGGGATGGAACAAGTGCAGGTTGCGGTGGA
TTAGTAACAGCAACAAAAGGAGCTTTAACTTCACCAAATTATCCACTTGCTTATCCTCAC
TATGCTCAATGTGAATGGCGAATTTCAGTCAATGAAGGAAGCTCAATTCACATCGTCTTT
TCTGATCTTGATCTTGAAGTTAATTCAGAATGTCGTTATGATTATCTAGAAATTTTCGAT
GGATCTGATGCAAGTGCAAGAAGTTTTGGAAAATTCTGTGATCATCATCCAATGCATATT
GAAACAAGCAGCAACCATGCAATGTTGAGAATGAACACTGATGAATCGCACAATGGTCGT
GGTTTTCATATTAAATATTCAACAAATTGCAATCGAACAATTGAAGCCGACACTGGAGTT
ATTGAATCACCAAATTTCCCTGAAAATTATCCAAATAATCTTGATTGTGCATGGACAATT
CGTGTATCAAGAGGAAATAAAATTGTAATTCAATTTTCACATTTTGAACTTGAAAATGAT
AAAATTTATCATGATGAGACAAAAGAGGATGTTTGTAAATATGATTATGTCACAATTTAT
GATTTAGATTATGAAACGAAAGAGAAGAAGCCACAGAAAAGTTATTGTAATAAAGCACCA
GAAATAAGAACAAGTACGACTGATGCTGTCGTTGTTGTCTTCCACACAGATCAAGCAGCT
GTAGCTTCAGGATTTCGTCTTGAATGGTACAATGAAGGTTGTGGTGGAAAATTAACTCAT
CCAGAAGGTGGTTTTACTTCTCCAAATTATCCAAAACGTTACGAACATGATTATGTTTGC
ACATGGGAAATTTTAGTTGAATTTGGCTACAATATTAAATTAACAATTCATGAATTTGAC
ATAGAAAGATCAAGTTCATGTCAATTTGATTCTTTAACAATTTCATATGATAAAAGTTTT
AATTCTTCAATTGTTACAAAATTATGTCAAACTTTGACACAACCGATGGTAATTTCATCT
GATGGTCATCAATTGTTTGTTCGATTTATAACAGATGAGTCACATAGTGGTCGTGGTTTT
AATATCACATATGAAACAATTGCATCAGACTGTGGGGGAGTTTTTACAGCAACCAATGGC
ATCATCAAAACGCCTTCATATCCAAATAAAAATTATGAAAATAACAAAACATGTGAATGG
TTGATAAGAGCTGATGAAACTCATTCAATTCAATTTCAATTGACTGATTTTGATTTGGAA
GAAACTTTAAATTGCACTAAAGATTATTTGGAAATTATTGATCCAATTTTTAATCAAACT
TTATGGAAAGGTTGTGGAAATGATTTAAAAAATTCAACAATTTTCCAAACAAAGCGGAAT
GAAATGCTGATAAGATTGAAAGCTGATGAAACTGTTAATGCCAAAGGATTTATTGGAAAT
TTTTCAATCAATTGTGGTGGTCGATTTGTTGTTGATGATGGAAGTGGTGAACTTGTTTAT
CGTAAAGCAAGTGAAAATGTCATTTGTGAATGGACAATTGTTGCTGCTGATCCATCAAAA
CATGTTACTTTAACATTCACTTATACTGAACTATTTTGGGAAATCGATGATGGATGTTTA
TTGAGTATTCAAGTTTTTGAAGGTGACAATGATGCAATTGGTGCCAAAAGAGCTTCATTT
TGTAGTACAAAGATTCCTCCTGCTATTGTTAGTCATGGCAATGCATTGACTGTGAGATTT
AATTCTTCATTATTTGGAACATCATTGGAATTTGATATGCATTATACCGTTATGGATAAT
GCTTGTGGTGGAAGTTACACAAAAAGTTTAAGCAGTCAATTTAGTTCTCCTAATTATCCA
GAATCATCACCTTTGAATTCTTATTGTATTTGGACAATAACAGCAAGTGAAGGAAACAAA
ATGAATTTAGAAGTCACAAATTTTGACATTGCACCTTCAACAAATTGCAATGAAAACTAT
TTAGAAATTCGAAAAATGAATGCAAATGGTGAACTCATTGGAGTTTTTTGTGGTAATATA
AAACCAGAACAAATTGAACCAGCTCAAGCTTACTGGATCAAATATAAAACTGACAATATT
TCACCCAATAATGGCTTTTTAGCTGAGTACAAATATTCAACACATTCAGATTTACAAGGT
GAAAAAGGCAAAATTCAATCACCGAATTATCCAAATTATTTCCGAAAAGAATATGAAAGC
ACTTATAGAATTACAGTTCAACAAGGTTCAGTAATTCGATTAACTTTCAAAGATTTTCAC
ATGGATGAAGAAGATCCTGATGATTGCTACTCAAATATTCAAATTTACAATGGTTTTGAC
AATACTGCAGTGCTTTTACATGATGAAATTTGTGCTGAACCACCAGAACCCTTGATTTCT
GAAACTAACATAATTTTCATTCAAGTCCGTAATGGAATTCATTCGAAAACAAAATTCCAA
CTTGAATGGGCACAAATTGATAAAAATAATACTGAAAGTGGTCGTAATAGTGTCTGTGGT
GATGAAATAATTTCAATTAATGATTTAAATCAAAGTATCAACATAAGTTCACCTGGATAT
CCTAATGGATATGATTCTAATCTTCTATGTGAATGGACAGTCGTTTCTGGAATTCCAACA
TATCATCCAATGATTAGATTCATTGATGTTGACCTCGAAGATGTTGATGAATGCACAGCT
GATTATGTAAAAGTCTCAAGAAGTTTGGATGATGGAAGTTGGCGAGAAATAAGTAAATTA
TGCATGATGGACATTCGTGAAAGAAAAATTTACCAAGGAACTCCAAATTTAAAAATTGAA
TTTTATTCTGATTACAATAGAAATGAAACTGGATTTTTTGGAATTCTTTCACTTCAATGT
GGTGGTGTTTTGACTGATTCTGATGGAGTTATTGATTTCAATCCAGCAAATGCAAGTGTA
ATGAGATTTATATTTTCTGATTGTATGTGGAACATAACAGTCAGAAGAGGACGAAAAATT
CAATTTGAATTTCTTGAAATTGACATAAAAAATTCAACTGAAGGTGAAAGAAATTCTGTA
ATAATAAAAAATGGACATGATGAGTCAGCACCATATCTTGGAATTGGTCAATATTATTCG
AAAGTTGATATTCCACAAACTACAGGCAATCGTGCTTTTGTTATGTACAGAGCTGCAGTT
CCATTTTTAGGTTCATTTAAATTGCGATATCAAGAAGTTCAAAATGAATGTGGTGGACAA
TTGACACTTTCAAATGCCTTACAAAGTTCAATAATTTCATCACCAAATTATCCAAATATT
CCACATCCTCATAGTGAATGTATTTGGACCATCATTGCACCACTCGGTCGTGAAGTTCGA
ATTGACTTTTTGGAAAGATTTGATTTAACTCGTGATGAAAATTGTGTCAAAGAATATGTC
GAATTACGTGAAGGTTCAACATCAGCAGCAAGTTTAGTTGGAACCTTCTGTGGTTCAATT
AAACCACCAACAATTTATACAAAATCAAATGTTTTAAGAGTTAAATTTTTCACTGACATT
TCTGAGCCTAAAAATGGATTTAAAGCAAATGTTTCAATTGGAATTTGTGGTGGAACTTTA
AGAACAACTGGAACTGGTTATTTGTCATCACCAAAATATCCTGGACTTGGTGCATATCCA
TCAAATGTGACTTGTGATTATCGAATTTTAGGACCACCAAATACACTTTTTAGCATAAAT
ATTAAAGAAATTGATTTGCCATCTAAGGATGATGAAGATGACTTTAATAGTGAAGAAATT
GATGCATCAGTTTGTGATTTAAATAAAGATCATTTAAAAATTTTTTCAATTATGCCAAGT
GAAAATTCAACTGAACAATTGATAGAAATTGGAACTTTTTGTGGAAAAATTCCAAATAAA
AATGAACTTTTGAGCGATTCAAATGAAATTTTGATAAAATTCAAAACTTTCCCAAAAACA
AATCAACTTTTTAAAGGATTTCGATTATTTTACAATGCTTCAAAGTTGAGTTGTGGTGGT
GATATCAATGCTAATTCTGGTTATATTACAAGTATTGGCTATCCATCAAGAACATTAAAT
AAAGCATTTTGTGAATGGAGAATTACAGTTAGAAAAGGCAGACGAGTAAAATTAGAATTT
GAAGATCTTGACTTTGTTTCATCAAATGTAAGGACAATGCAAAGAATTGTGGTCTACAGT
GACTTTTCATATTCAAGTCGAATGATGTTCATTACAAACAACACAAATCCGGGACCAATT
TATTCATCTGATAATAAATTAATGCTAACAGCTTGGATTCGAACACCATCACAAAATCGT
GGTTTTAAAATTAAATTTTCAAGTGATGAAGTTTCAAGTTGTGAAGGAGATTTAAATCAA
AATGAAGGTTTTATTTATCCAGCAAATATTATAAATGCTACAAGTTATTCATGCTCTTAT
ATTCGTGAAAACAAACCAATAATTCCGAATTCACCAAATACTGGAACTATCGCGATGTAT
TTCACAAATTTAGCTGTTGGTCGTCGTGTCATGAATTGTAGATTTGCAGCAACAAGTTTA
ACAATTTCTAGAGAATCAGCAATGAGTGATGAAAAAAAATATTTGGCAAGAATTTGTGGA
AATGCAACAGAAAAAATGACAGTTCTTTCACCATTTCCTGACATTCGTTTTGATGTCAAA
CAAAGTCCATATTTTGGCAGTGTAAATTTTTCATTGTATTATAAAATTCATAAATGTGGT
GGAATTGTCAAAGGCGGAGCTGAACCAATAATTTTAAATAATTCACCAGCAAGTGCTGCA
AATTATGAAGTTTTAGATTGTGCAGTTCAAGTAAAATATGAAGAAGGTTTTACAATTTCA
ATTAAAATTGAAAGTTTGAATTTAAAACTTCCATGTGATAAAGAATTTATTGCAATTTAT
AATGGACCAACTGCACAAAGTCCACTTTTGATAAAATTATGCGGAAGTGAATTTGACAGC
ACACCAATGATTTCACAAAAGGAAACAGTTTATTTTGAATATCACACAGATAATTTTGTT
GGACAAAGTAAAAATTCTCAATATTCGATAAAAGTTGAATCATCAACATTTGGTTGTGGT
GGAATTTTAAATCACATGAGTCGAAGATTTAATACACCATTGTATGACAAACCTTATCCA
TCAAATTCTGAATGTATTTGGGAACTTCGTGCTGATGTTGGTTATCAAGTTGGTCTTTAT
TTTCCTGATCGATTTTTCATTGAAGATTCAACAAATTGCACCAAAGATTATTTAGAATTT
TATGATTTTGTTGACAATGATTGGAAATTTATATCAAGAGTTTGTGGCCGCAGTCCACCA
AAACCAATCAATTCAACATCAACAAAACTTCGAGTTCTTTTTCATTCTGATTCAACAATT
AATGCTGATGGATTTCTGGCACAATGGGATCAAAATTGTGGTGGAATTATTCAAGTTGAT
GAGAAAAGTAGAATTTTAAGTAGTCCACATTATCCACGACCTTATGATGCAAATTTATAC
TGCAATTATACTTTTGTGACTAAAAATTCTGAAGAATTTATAAATTTGAAGTTTTTAGAT
TTTCAAGTTGAAACAATGCAAGGAAAATGTTTTTATGACAATGTCACAATTTATAAATTT
TTAGACTATCATTCACCAGTGCAGAATCAAAAAGTTGGAACATATTGTGGAAATAAAAAT
CCTGGAAATTTCCGATATAAAGCAAAAATTGTGATGATTTTTGTAACTGACAGATGGGTA
GAAAAGCCAGGATTTCAACTTGAATATAGTTTAGATAAATGTGGTGGACTTGTGACAGCC
CCAACAACAATTTCTTCGCCTGCAGTTTTGAAAAATCCAACTAAAGATCTTTGGGAATAT
GTTGGAACACTTTCATGTGTTTGGAACATCACTGCACCTGCAAATAAAAAAATTGTGTTG
AAATTTGAAAATATTCAACTTTCATTTGATGAATATTGCAGTTATGACTATATTGAAGTT
TTTAATGGAACTTTGGATGATGAAAAAAATCGATTGATGAGAGTTTGCAGTAATTTAACT
ATTCCACCAATTTCTATACTAAATAATGAAGTTGTAGTGAAAATGAGATCAGAACAATCA
AAGGAATTTGTTGGATTTTCAGCTGCTGTAATTTTTCAAGAAAAATGTGATGAAATTATA
AAATTAACTTTAGAAAAATCTTCATTTATAATTGACAAAAGTAATCAACAACTTGGGAAT
AATTTGGAATGTTCATATCATATTATTGGTGATCCGCTTTCTGTAATTCGTGTGAAATTT
AATGAACTTCATTTATCAATTTGTGATCCTGATCAACACAAAGGAGAATGCAATTGTGAC
TATTTAGAAATTTTTGATGGTCATGGACCATTAAGTCAATCAATTGGAAAATTTTGTGGA
CATGAAAATCCAGTTGATGTAATTTCAACTTCATCAGGAATTTTTATAAGATTGGTCACA
GATTCAATACGAAGTAGCACTGGATTTAAATTGACAGTTACAATGCAAGAATCACCTTGT
GGTCCAGCACCATTTTATAATTTTACTGAAAATGGCAATGAAAGTGTCATACTTTATTCA
CCAAGATTACCTGGAAATTCGCAAAAATATTTACCAAATGTTCGATGTCAATGGATCATG
CAGGCTGACAATTATCGAAATATTGAAATTATTTTTAAGAAATTTGACATTGAAGATTCA
GAAAATTGCAAAAATGATTTCTTAAGAATTGTGGATGATTCAGTTCGTGATTATGTAACA
GAAGGTTTAGGTGAAGGAATGATTTATCGTGGTAAAAGTTACCAAAGTATCAATCCAGGT
TTTTATTCAGGTGTCAATGGACCAATTGCTCCTCACATCTATTGTGGCTCAATTATTCCA
CACGATTATTATTCACAAACCAGCAAAATTCGAATTTATTTTGAGTCAAATTCAGTCGAA
GAATTTTCAGGCTTTGAACTTGAAGTTCGTACAATAAATGCTTGCTCAAGAAATTACACA
GCATTGCAGGGAAGACTTATGGCTGATGCACAACCTGAAAGTTGCCATATGACAATAACT
GTGCCTGAAAATTACACAATTTCTCTTTATTTTTCGAAATTTTATTTCTATTTGGATGAT
TGTGAAAAAGCTTTTATGAAAGTTTATGATGGTGATTTTGAAAATGGAAAATTATTAAAA
ATATTATGCGGTTATACTTCACCCGATCCAATATTTTCAAGTACTAATCAACTTTCTATT
AAAGTGCAATTTGATGATGTTGAAGCTGGAAGATTTTCGAGAGGAAATTATGACATTTTG
TATGTTGCATCTGAAAAGAGCAAAGGGCAAGGTTGTGGTGGTGAAATTTTCAATTATGGT
GGAATTTTCACAAGTCCACTTTATCCAAGTAATAATAGAACAAATTATGACTGCATTTGG
AATGTCAGAGTTCCTCAAAATCTTGTAATTGCGATTAAATTTGTAGTTTTTGACATGGGA
TCAAAAATGACTTGCGATATTGATTATGTTGAATTGATGGAAGAAAATTCTGAAAAAGAA
TTTGTGTCAATTAAGAAATATTGTGGTGATGATGAACCTGCAATTTATGTGAGCAGTAAA
AGTCAAATTCGAGTTCATTACAAGCAGACTGTTCATTTTGCTGGCACTGGATGGATTATT
AATTTTATTGGTGTTCATCAAGGTGCATCTGTCCAGGATTGGTAA
>g16257.t1 Gene=g16257 Length=2674
MICGGSFHSTRGTIRSPGSPQYFPNKDCEWTITVPNGQQIEINFKYFDIEAHATCRFDGL
EVRNGGNNLAPLLGKFCGDTAPVPFKSLGNQLYFKFYSDSSRSGAGFELEWDGTSAGCGG
LVTATKGALTSPNYPLAYPHYAQCEWRISVNEGSSIHIVFSDLDLEVNSECRYDYLEIFD
GSDASARSFGKFCDHHPMHIETSSNHAMLRMNTDESHNGRGFHIKYSTNCNRTIEADTGV
IESPNFPENYPNNLDCAWTIRVSRGNKIVIQFSHFELENDKIYHDETKEDVCKYDYVTIY
DLDYETKEKKPQKSYCNKAPEIRTSTTDAVVVVFHTDQAAVASGFRLEWYNEGCGGKLTH
PEGGFTSPNYPKRYEHDYVCTWEILVEFGYNIKLTIHEFDIERSSSCQFDSLTISYDKSF
NSSIVTKLCQTLTQPMVISSDGHQLFVRFITDESHSGRGFNITYETIASDCGGVFTATNG
IIKTPSYPNKNYENNKTCEWLIRADETHSIQFQLTDFDLEETLNCTKDYLEIIDPIFNQT
LWKGCGNDLKNSTIFQTKRNEMLIRLKADETVNAKGFIGNFSINCGGRFVVDDGSGELVY
RKASENVICEWTIVAADPSKHVTLTFTYTELFWEIDDGCLLSIQVFEGDNDAIGAKRASF
CSTKIPPAIVSHGNALTVRFNSSLFGTSLEFDMHYTVMDNACGGSYTKSLSSQFSSPNYP
ESSPLNSYCIWTITASEGNKMNLEVTNFDIAPSTNCNENYLEIRKMNANGELIGVFCGNI
KPEQIEPAQAYWIKYKTDNISPNNGFLAEYKYSTHSDLQGEKGKIQSPNYPNYFRKEYES
TYRITVQQGSVIRLTFKDFHMDEEDPDDCYSNIQIYNGFDNTAVLLHDEICAEPPEPLIS
ETNIIFIQVRNGIHSKTKFQLEWAQIDKNNTESGRNSVCGDEIISINDLNQSINISSPGY
PNGYDSNLLCEWTVVSGIPTYHPMIRFIDVDLEDVDECTADYVKVSRSLDDGSWREISKL
CMMDIRERKIYQGTPNLKIEFYSDYNRNETGFFGILSLQCGGVLTDSDGVIDFNPANASV
MRFIFSDCMWNITVRRGRKIQFEFLEIDIKNSTEGERNSVIIKNGHDESAPYLGIGQYYS
KVDIPQTTGNRAFVMYRAAVPFLGSFKLRYQEVQNECGGQLTLSNALQSSIISSPNYPNI
PHPHSECIWTIIAPLGREVRIDFLERFDLTRDENCVKEYVELREGSTSAASLVGTFCGSI
KPPTIYTKSNVLRVKFFTDISEPKNGFKANVSIGICGGTLRTTGTGYLSSPKYPGLGAYP
SNVTCDYRILGPPNTLFSINIKEIDLPSKDDEDDFNSEEIDASVCDLNKDHLKIFSIMPS
ENSTEQLIEIGTFCGKIPNKNELLSDSNEILIKFKTFPKTNQLFKGFRLFYNASKLSCGG
DINANSGYITSIGYPSRTLNKAFCEWRITVRKGRRVKLEFEDLDFVSSNVRTMQRIVVYS
DFSYSSRMMFITNNTNPGPIYSSDNKLMLTAWIRTPSQNRGFKIKFSSDEVSSCEGDLNQ
NEGFIYPANIINATSYSCSYIRENKPIIPNSPNTGTIAMYFTNLAVGRRVMNCRFAATSL
TISRESAMSDEKKYLARICGNATEKMTVLSPFPDIRFDVKQSPYFGSVNFSLYYKIHKCG
GIVKGGAEPIILNNSPASAANYEVLDCAVQVKYEEGFTISIKIESLNLKLPCDKEFIAIY
NGPTAQSPLLIKLCGSEFDSTPMISQKETVYFEYHTDNFVGQSKNSQYSIKVESSTFGCG
GILNHMSRRFNTPLYDKPYPSNSECIWELRADVGYQVGLYFPDRFFIEDSTNCTKDYLEF
YDFVDNDWKFISRVCGRSPPKPINSTSTKLRVLFHSDSTINADGFLAQWDQNCGGIIQVD
EKSRILSSPHYPRPYDANLYCNYTFVTKNSEEFINLKFLDFQVETMQGKCFYDNVTIYKF
LDYHSPVQNQKVGTYCGNKNPGNFRYKAKIVMIFVTDRWVEKPGFQLEYSLDKCGGLVTA
PTTISSPAVLKNPTKDLWEYVGTLSCVWNITAPANKKIVLKFENIQLSFDEYCSYDYIEV
FNGTLDDEKNRLMRVCSNLTIPPISILNNEVVVKMRSEQSKEFVGFSAAVIFQEKCDEII
KLTLEKSSFIIDKSNQQLGNNLECSYHIIGDPLSVIRVKFNELHLSICDPDQHKGECNCD
YLEIFDGHGPLSQSIGKFCGHENPVDVISTSSGIFIRLVTDSIRSSTGFKLTVTMQESPC
GPAPFYNFTENGNESVILYSPRLPGNSQKYLPNVRCQWIMQADNYRNIEIIFKKFDIEDS
ENCKNDFLRIVDDSVRDYVTEGLGEGMIYRGKSYQSINPGFYSGVNGPIAPHIYCGSIIP
HDYYSQTSKIRIYFESNSVEEFSGFELEVRTINACSRNYTALQGRLMADAQPESCHMTIT
VPENYTISLYFSKFYFYLDDCEKAFMKVYDGDFENGKLLKILCGYTSPDPIFSSTNQLSI
KVQFDDVEAGRFSRGNYDILYVASEKSKGQGCGGEIFNYGGIFTSPLYPSNNRTNYDCIW
NVRVPQNLVIAIKFVVFDMGSKMTCDIDYVELMEENSEKEFVSIKKYCGDDEPAIYVSSK
SQIRVHYKQTVHFAGTGWIINFIGVHQGASVQDW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 110 | g16257.t1 | CDD | cd00041 | CUB | 3 | 111 | 0.0000000 |
| 113 | g16257.t1 | CDD | cd00041 | CUB | 118 | 228 | 0.0000000 |
| 122 | g16257.t1 | CDD | cd00041 | CUB | 230 | 350 | 0.0000000 |
| 126 | g16257.t1 | CDD | cd00041 | CUB | 354 | 466 | 0.0000000 |
| 112 | g16257.t1 | CDD | cd00041 | CUB | 471 | 583 | 0.0000000 |
| 125 | g16257.t1 | CDD | cd00041 | CUB | 702 | 810 | 0.0000000 |
| 119 | g16257.t1 | CDD | cd00041 | CUB | 823 | 923 | 0.0000000 |
| 114 | g16257.t1 | CDD | cd00041 | CUB | 939 | 1052 | 0.0000000 |
| 116 | g16257.t1 | CDD | cd00041 | CUB | 1177 | 1293 | 0.0000000 |
| 117 | g16257.t1 | CDD | cd00041 | CUB | 1307 | 1433 | 0.0000000 |
| 115 | g16257.t1 | CDD | cd00041 | CUB | 1438 | 1548 | 0.0000000 |
| 111 | g16257.t1 | CDD | cd00041 | CUB | 1679 | 1778 | 0.0000000 |
| 121 | g16257.t1 | CDD | cd00041 | CUB | 1799 | 1909 | 0.0000000 |
| 127 | g16257.t1 | CDD | cd00041 | CUB | 1913 | 2030 | 0.0000000 |
| 120 | g16257.t1 | CDD | cd00041 | CUB | 2034 | 2148 | 0.0000000 |
| 123 | g16257.t1 | CDD | cd00041 | CUB | 2180 | 2274 | 0.0000000 |
| 118 | g16257.t1 | CDD | cd00041 | CUB | 2291 | 2431 | 0.0000000 |
| 124 | g16257.t1 | CDD | cd00041 | CUB | 2455 | 2531 | 0.0000000 |
| 109 | g16257.t1 | CDD | cd00041 | CUB | 2552 | 2662 | 0.0000000 |
| 73 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1 | 112 | 0.0000000 |
| 70 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 113 | 227 | 0.0000000 |
| 80 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 228 | 351 | 0.0000000 |
| 77 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 354 | 471 | 0.0000000 |
| 69 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 472 | 584 | 0.0000000 |
| 71 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 585 | 698 | 0.0000000 |
| 85 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 699 | 812 | 0.0000000 |
| 84 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 814 | 928 | 0.0000000 |
| 81 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 933 | 1057 | 0.0000000 |
| 68 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1058 | 1172 | 0.0000000 |
| 78 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1173 | 1295 | 0.0000000 |
| 76 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1296 | 1434 | 0.0000000 |
| 74 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1438 | 1551 | 0.0000000 |
| 83 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1673 | 1795 | 0.0000000 |
| 87 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1799 | 1910 | 0.0000000 |
| 75 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 1911 | 2030 | 0.0000000 |
| 72 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 2031 | 2155 | 0.0000000 |
| 86 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 2161 | 2277 | 0.0000000 |
| 82 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 2448 | 2541 | 0.0000000 |
| 79 | g16257.t1 | Gene3D | G3DSA:2.60.120.290 | - | 2552 | 2668 | 0.0000000 |
| 25 | g16257.t1 | PANTHER | PTHR46908 | CUBILIN-LIKE PROTEIN | 3 | 356 | 0.0000000 |
| 24 | g16257.t1 | PANTHER | PTHR46908 | CUBILIN-LIKE PROTEIN | 352 | 2152 | 0.0000000 |
| 22 | g16257.t1 | PANTHER | PTHR46908 | CUBILIN-LIKE PROTEIN | 2176 | 2358 | 0.0000000 |
| 23 | g16257.t1 | PANTHER | PTHR46908 | CUBILIN-LIKE PROTEIN | 2453 | 2663 | 0.0000000 |
| 10 | g16257.t1 | Pfam | PF00431 | CUB domain | 3 | 110 | 0.0000000 |
| 13 | g16257.t1 | Pfam | PF00431 | CUB domain | 118 | 226 | 0.0000000 |
| 21 | g16257.t1 | Pfam | PF00431 | CUB domain | 230 | 348 | 0.0000000 |
| 8 | g16257.t1 | Pfam | PF00431 | CUB domain | 354 | 464 | 0.0000000 |
| 14 | g16257.t1 | Pfam | PF00431 | CUB domain | 471 | 578 | 0.0000000 |
| 17 | g16257.t1 | Pfam | PF00431 | CUB domain | 603 | 695 | 0.0000003 |
| 18 | g16257.t1 | Pfam | PF00431 | CUB domain | 702 | 810 | 0.0000000 |
| 6 | g16257.t1 | Pfam | PF00431 | CUB domain | 818 | 909 | 0.0000000 |
| 16 | g16257.t1 | Pfam | PF00431 | CUB domain | 950 | 1052 | 0.0000000 |
| 19 | g16257.t1 | Pfam | PF00431 | CUB domain | 1060 | 1157 | 0.0000038 |
| 7 | g16257.t1 | Pfam | PF00431 | CUB domain | 1177 | 1290 | 0.0000000 |
| 15 | g16257.t1 | Pfam | PF00431 | CUB domain | 1296 | 1431 | 0.0000000 |
| 5 | g16257.t1 | Pfam | PF00431 | CUB domain | 1438 | 1546 | 0.0000000 |
| 9 | g16257.t1 | Pfam | PF00431 | CUB domain | 1702 | 1779 | 0.0000000 |
| 12 | g16257.t1 | Pfam | PF00431 | CUB domain | 1799 | 1908 | 0.0000000 |
| 4 | g16257.t1 | Pfam | PF00431 | CUB domain | 1913 | 2029 | 0.0000000 |
| 20 | g16257.t1 | Pfam | PF00431 | CUB domain | 2059 | 2148 | 0.0000000 |
| 11 | g16257.t1 | Pfam | PF00431 | CUB domain | 2176 | 2272 | 0.0000000 |
| 3 | g16257.t1 | Pfam | PF00431 | CUB domain | 2298 | 2357 | 0.0000000 |
| 1 | g16257.t1 | Pfam | PF00431 | CUB domain | 2439 | 2527 | 0.0000000 |
| 2 | g16257.t1 | Pfam | PF00431 | CUB domain | 2552 | 2662 | 0.0000000 |
| 89 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 3 | 114 | 27.9130000 |
| 99 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 118 | 229 | 27.3770000 |
| 96 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 230 | 352 | 22.4470000 |
| 97 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 354 | 467 | 25.0170000 |
| 92 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 471 | 584 | 25.6530000 |
| 93 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 585 | 698 | 11.6970000 |
| 105 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 702 | 813 | 23.1950000 |
| 106 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 814 | 926 | 11.2730000 |
| 103 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 939 | 1059 | 16.9090000 |
| 95 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1060 | 1173 | 10.2420000 |
| 94 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1177 | 1294 | 28.3370000 |
| 100 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1296 | 1434 | 17.9120000 |
| 107 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1438 | 1549 | 14.6350000 |
| 108 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1679 | 1795 | 12.5870000 |
| 91 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1799 | 1912 | 24.8760000 |
| 104 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 1913 | 2032 | 18.9570000 |
| 102 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 2034 | 2153 | 18.9430000 |
| 101 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 2156 | 2276 | 16.5980000 |
| 98 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 2280 | 2432 | 13.6740000 |
| 90 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 2435 | 2544 | 14.3100000 |
| 88 | g16257.t1 | ProSiteProfiles | PS01180 | CUB domain profile. | 2552 | 2665 | 19.6210000 |
| 48 | g16257.t1 | SMART | SM00042 | CUB_2 | 3 | 114 | 0.0000000 |
| 57 | g16257.t1 | SMART | SM00042 | CUB_2 | 118 | 229 | 0.0000000 |
| 55 | g16257.t1 | SMART | SM00042 | CUB_2 | 230 | 352 | 0.0000000 |
| 56 | g16257.t1 | SMART | SM00042 | CUB_2 | 354 | 467 | 0.0000000 |
| 50 | g16257.t1 | SMART | SM00042 | CUB_2 | 471 | 584 | 0.0000000 |
| 51 | g16257.t1 | SMART | SM00042 | CUB_2 | 585 | 698 | 0.0000000 |
| 63 | g16257.t1 | SMART | SM00042 | CUB_2 | 702 | 813 | 0.0000000 |
| 64 | g16257.t1 | SMART | SM00042 | CUB_2 | 814 | 926 | 0.0000099 |
| 61 | g16257.t1 | SMART | SM00042 | CUB_2 | 939 | 1059 | 0.0000000 |
| 54 | g16257.t1 | SMART | SM00042 | CUB_2 | 1060 | 1173 | 0.0005400 |
| 53 | g16257.t1 | SMART | SM00042 | CUB_2 | 1177 | 1294 | 0.0000000 |
| 58 | g16257.t1 | SMART | SM00042 | CUB_2 | 1296 | 1434 | 0.0000000 |
| 65 | g16257.t1 | SMART | SM00042 | CUB_2 | 1438 | 1549 | 0.0000000 |
| 67 | g16257.t1 | SMART | SM00042 | CUB_2 | 1679 | 1795 | 0.0004100 |
| 49 | g16257.t1 | SMART | SM00042 | CUB_2 | 1799 | 1912 | 0.0000000 |
| 62 | g16257.t1 | SMART | SM00042 | CUB_2 | 1913 | 2032 | 0.0000000 |
| 60 | g16257.t1 | SMART | SM00042 | CUB_2 | 2034 | 2153 | 0.0000000 |
| 59 | g16257.t1 | SMART | SM00042 | CUB_2 | 2156 | 2276 | 0.0000000 |
| 66 | g16257.t1 | SMART | SM00042 | CUB_2 | 2284 | 2432 | 0.0000820 |
| 52 | g16257.t1 | SMART | SM00042 | CUB_2 | 2435 | 2540 | 0.0000001 |
| 47 | g16257.t1 | SMART | SM00042 | CUB_2 | 2552 | 2665 | 0.0000000 |
| 40 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2 | 111 | 0.0000000 |
| 28 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 117 | 227 | 0.0000000 |
| 34 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 229 | 350 | 0.0000000 |
| 27 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 353 | 466 | 0.0000000 |
| 32 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 470 | 582 | 0.0000000 |
| 31 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 583 | 702 | 0.0000000 |
| 41 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 702 | 811 | 0.0000000 |
| 44 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 818 | 925 | 0.0000000 |
| 43 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 955 | 1053 | 0.0000000 |
| 30 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1056 | 1177 | 0.0000000 |
| 42 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1176 | 1291 | 0.0000000 |
| 35 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1296 | 1433 | 0.0000000 |
| 37 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1437 | 1547 | 0.0000000 |
| 45 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1673 | 1780 | 0.0000000 |
| 46 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1798 | 1909 | 0.0000000 |
| 38 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 1912 | 2030 | 0.0000000 |
| 29 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2034 | 2149 | 0.0000000 |
| 26 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2178 | 2272 | 0.0000000 |
| 36 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2295 | 2431 | 0.0000000 |
| 33 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2432 | 2529 | 0.0000000 |
| 39 | g16257.t1 | SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 2551 | 2662 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14616 (cubilin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
